pCRM CE7001

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
CE7001
Overlaps:
runt stripe 3
Reference:
Butler, 1992
Berman 2002 ID:
Crm Activity:
+
5' Primer:
3' Primer:

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X
pCRM start:
20,355,604
pCRM end:
20,358,006
pCRM len:
2,403

D.pse region homologous:
1
D.pse fasta:
dpse unflanked
dpse arm:
Dpse_3212383_1_44815
dpse start:
16,199
dpse end:
18,855
dpse len:
2,657

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
5.1

Percent identity:
53.2%

D.mel sites:
24
D.pse sites:
21
Aligned sites:
8
Aligned + preserved sites:
18

D.mel site dens:
10.0
D.pse site dens:
7.9
Aligned site dens:
3.3
Aligned + preserved site dens:
7.5

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-7,948
5' gene CG:
CG1338
5' gene:
CG1338
5' gene insitu:
CG1338 insitu
5' gene flybase:
CG1338 flybase
5' gene start:
20,347,656
5' gene end:
20,343,243
5' gene txl start:
20,347,578

pCRM position 3' gene relative:
upstream
pCRM position relative to 3' gene:
-8,849
3' gene CG:
CG1849
3' gene:
run
3' gene insitu:
run insitu
3' gene flybase:
run flybase
3' gene start:
20,366,855
3' gene end:
20,369,741
3' gene txl start:
20,367,107