pCRM CE7002

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
CE7002
Overlaps:
eve stripe 3/7
Reference:
Harding/Goto 1989
Berman 2002 ID:
Crm Activity:
+
5' Primer:
3' Primer:

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2R
pCRM start:
5,036,134
pCRM end:
5,036,643
pCRM len:
510

D.pse region homologous:
1
D.pse fasta:
dpse unflanked
dpse arm:
Dpse_3213009_3212129_1_42085
dpse start:
19,777
dpse end:
20,360
dpse len:
584

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
13.4

Percent identity:
77.8%

D.mel sites:
14
D.pse sites:
15
Aligned sites:
13
Aligned + preserved sites:
14

D.mel site dens:
27.4
D.pse site dens:
25.7
Aligned site dens:
25.5
Aligned + preserved site dens:
27.5

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
4,353
5' gene CG:
CG12134
5' gene:
CG12134
5' gene insitu:
CG12134 insitu
5' gene flybase:
CG12134 flybase
5' gene start:
5,031,781
5' gene end:
5,033,416
5' gene txl start:
5,032,291

pCRM position 3' gene relative:
upstream
pCRM position relative to 3' gene:
-3,080
3' gene CG:
CG2328
3' gene:
eve
3' gene insitu:
eve insitu
3' gene flybase:
eve flybase
3' gene start:
5,039,723
3' gene end:
5,041,412
3' gene txl start:
5,040,047