pCRM CE7004

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
CE7004
Overlaps:
eve stripe 4/6
Reference:
Sackerson, 1999
Berman 2002 ID:
Crm Activity:
+
5' Primer:
3' Primer:

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2R
pCRM start:
5,044,530
pCRM end:
5,045,130
pCRM len:
601

D.pse region homologous:
1
D.pse fasta:
dpse unflanked
dpse arm:
Dpse_3213009_3212129_1_41218
dpse start:
21,710
dpse end:
22,462
dpse len:
753

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
11.0

Percent identity:
76.0%

D.mel sites:
13
D.pse sites:
14
Aligned sites:
12
Aligned + preserved sites:
13

D.mel site dens:
21.6
D.pse site dens:
18.6
Aligned site dens:
20.0
Aligned + preserved site dens:
21.6

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
4,807
5' gene CG:
CG2328
5' gene:
eve
5' gene insitu:
eve insitu
5' gene flybase:
eve flybase
5' gene start:
5,039,723
5' gene end:
5,041,412
5' gene txl start:
5,040,047

pCRM position 3' gene relative:
upstream
pCRM position relative to 3' gene:
-4,663
3' gene CG:
CG2331
3' gene:
TER94
3' gene insitu:
TER94 insitu
3' gene flybase:
TER94 flybase
3' gene start:
5,049,793
3' gene end:
5,054,196
3' gene txl start:
5,049,919