pCRM CE7008
| CRM: |
| CE7008 |
|---|
| Overlaps: |
| kni upstream |
|---|
| Reference: |
| Pankratz, 1989 |
|---|
| Berman 2002 ID: |
| |
|---|
| Crm Activity: |
| + |
|---|
| 5' Primer: |
| |
|---|
| 3' Primer: |
| |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3L |
|---|
| pCRM start: |
| 20,615,080 |
|---|
| pCRM end: |
| 20,616,107 |
|---|
| pCRM len: |
| 1,028 |
|---|
|
| D.pse region homologous: |
| 1 |
|---|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| Dpse_3213110_1_51190 |
|---|
| dpse start: |
| 23,770 |
|---|
| dpse end: |
| 25,081 |
|---|
| dpse len: |
| 1,312 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 14.7 |
|---|
|
| Percent identity: |
| 69.4% |
|---|
|
| D.mel sites: |
| 27 |
|---|
| D.pse sites: |
| 27 |
|---|
| Aligned sites: |
| 20 |
|---|
| Aligned + preserved sites: |
| 25 |
|---|
|
| D.mel site dens: |
| 26.3 |
|---|
| D.pse site dens: |
| 20.6 |
|---|
| Aligned site dens: |
| 19.5 |
|---|
| Aligned + preserved site dens: |
| 24.3 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -1,179 |
|---|
| 5' gene CG: |
| CG4717 |
|---|
| 5' gene: |
| kni |
|---|
| 5' gene insitu: |
| kni insitu |
|---|
| 5' gene flybase: |
| kni flybase |
|---|
| 5' gene start: |
| 20,613,901 |
|---|
| 5' gene end: |
| 20,610,867 |
|---|
| 5' gene txl start: |
| 20,612,878 |
|---|
|
| pCRM position 3' gene relative: |
| downstream |
|---|
| pCRM position relative to 3' gene: |
| 21,629 |
|---|
| 3' gene CG: |
| CG13253 |
|---|
| 3' gene: |
| CG13253 |
|---|
| 3' gene insitu: |
| CG13253 insitu |
|---|
| 3' gene flybase: |
| CG13253 flybase |
|---|
| 3' gene start: |
| 20,637,736 |
|---|
| 3' gene end: |
| 20,635,332 |
|---|
| 3' gene txl start: |
| 20,635,683 |
|---|
