pCRM CE7009

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
CE7009
Overlaps:
hb HZ1.4
Reference:
Tautz, 1988
Berman 2002 ID:
Crm Activity:
+
5' Primer:
3' Primer:

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R
pCRM start:
4,526,537
pCRM end:
4,527,957
pCRM len:
1,421

D.pse region homologous:
1
D.pse fasta:
dpse unflanked
dpse arm:
Dpse_3213225_3212440_1_37623
dpse start:
21,332
dpse end:
22,810
dpse len:
1,479

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
7.1

Percent identity:
63.1%

D.mel sites:
19
D.pse sites:
18
Aligned sites:
12
Aligned + preserved sites:
15

D.mel site dens:
13.4
D.pse site dens:
12.2
Aligned site dens:
8.4
Aligned + preserved site dens:
10.6

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-2,982
5' gene CG:
CG9786
5' gene:
hb
5' gene insitu:
hb insitu
5' gene flybase:
hb flybase
5' gene start:
4,523,555
5' gene end:
4,517,052
5' gene txl start:
4,519,891

pCRM position 3' gene relative:
within_intron
pCRM position relative to 3' gene:
181
3' gene CG:
CG8112
3' gene:
CG8112
3' gene insitu:
CG8112 insitu
3' gene flybase:
CG8112 flybase
3' gene start:
4,526,718
3' gene end:
4,541,005
3' gene txl start:
4,538,858