pCRM CE8015

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
CE8015
Overlaps:
cluster_at_47A
Reference:
Berman, 2004
Berman 2002 ID:
19
Crm Activity:
-
5' Primer:
5'-TTAGGCGCGCCTGTAGATACACTTCGGTTTCC-3'
3' Primer:
5'-ATTGCGGCCGCATGATGCCCACATACTGAC-3'

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2R
pCRM start:
5,664,034
pCRM end:
5,665,331
pCRM len:
1,298

D.pse region homologous:
1
D.pse fasta:
dpse unflanked
dpse arm:
Dpse_3213122_1_27515
dpse start:
13,844
dpse end:
14,898
dpse len:
1,055

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
1.4

Percent identity:
50.5%

D.mel sites:
16
D.pse sites:
5
Aligned sites:
3
Aligned + preserved sites:
5

D.mel site dens:
12.3
D.pse site dens:
4.7
Aligned site dens:
2.3
Aligned + preserved site dens:
3.9

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
45,498
5' gene CG:
CG2368
5' gene:
psq
5' gene insitu:
psq insitu
5' gene flybase:
psq flybase
5' gene start:
5,618,536
5' gene end:
5,676,888
5' gene txl start:
5,622,437

pCRM position 3' gene relative:
within_intron
pCRM position relative to 3' gene:
45,498
3' gene CG:
CG2368
3' gene:
psq
3' gene insitu:
psq insitu
3' gene flybase:
psq flybase
3' gene start:
5,618,536
3' gene end:
5,676,888
3' gene txl start:
5,622,437