pCRM CE8021

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
CE8021
Overlaps:
cluster_at_75C
Reference:
Berman, 2004
Berman 2002 ID:
23
Crm Activity:
-
5' Primer:
5'-TTAGGCGCGCCGAGCGAAGGATACAGGATCTA-3'
3' Primer:
5'-ATTGCGGCCGCCGCACAGTCCACTCGTAA-3'

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L
pCRM start:
18,339,620
pCRM end:
18,340,904
pCRM len:
1,285

D.pse region homologous:
1
D.pse fasta:
dpse unflanked
dpse arm:
Dpse_3212212_1_56415
dpse start:
32,275
dpse end:
31,086
dpse len:
1,190

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
6.6

Percent identity:
59.5%

D.mel sites:
20
D.pse sites:
14
Aligned sites:
11
Aligned + preserved sites:
13

D.mel site dens:
15.6
D.pse site dens:
11.8
Aligned site dens:
8.5
Aligned + preserved site dens:
10.1

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-86,327
5' gene CG:
CG4345
5' gene:
grim
5' gene insitu:
grim insitu
5' gene flybase:
grim flybase
5' gene start:
18,253,293
5' gene end:
18,251,597
5' gene txl start:
18,252,978

pCRM position 3' gene relative:
downstream
pCRM position relative to 3' gene:
6,378
3' gene CG:
CG4319
3' gene:
rpr
3' gene insitu:
rpr insitu
3' gene flybase:
rpr flybase
3' gene start:
18,347,282
3' gene end:
18,346,431
3' gene txl start:
18,347,114