pCRM CE8023

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
CE8023
Overlaps:
cluster_at_84A
Reference:
Berman, 2004
Berman 2002 ID:
25
Crm Activity:
-
5' Primer:
5'-TTAGGCGCGCCGGTTGCGGTTCGTGCTC-3'
3' Primer:
5'-ATTGCGGCCGCAGTATCACTGGTTGGCGATGG-3'

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R
pCRM start:
2,595,080
pCRM end:
2,596,370
pCRM len:
1,291

D.pse region homologous:
1
D.pse fasta:
dpse unflanked
dpse arm:
Dpse_3212942_3212942_1_46935
dpse start:
22,995
dpse end:
24,666
dpse len:
1,672

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.0

Percent identity:
63.6%

D.mel sites:
16
D.pse sites:
8
Aligned sites:
5
Aligned + preserved sites:
8

D.mel site dens:
12.4
D.pse site dens:
4.8
Aligned site dens:
3.9
Aligned + preserved site dens:
6.2

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
6,765
5' gene CG:
CG2198
5' gene:
Ama
5' gene insitu:
Ama insitu
5' gene flybase:
Ama flybase
5' gene start:
2,588,315
5' gene end:
2,590,984
5' gene txl start:
2,589,562

pCRM position 3' gene relative:
upstream
pCRM position relative to 3' gene:
-21,188
3' gene CG:
CG2189
3' gene:
Dfd
3' gene insitu:
Dfd insitu
3' gene flybase:
Dfd flybase
3' gene start:
2,617,558
3' gene end:
2,628,154
3' gene txl start:
2,618,047