| Region plot | Region plot detail | Dotplot |
| | |
| [jpg] [pdf] | [jpg] [pdf] | [jpg] [pdf] |
| CRM: | CE8025 | |
|---|---|---|
| Overlaps: | cluster_at_85C | |
| Reference: | Berman, 2004 | |
| Berman 2002 ID: | 26 | |
| Crm Activity: | - | |
| 5' Primer: | 5'-TTAGGCGCGCCAAAGCCACAGAACTCGCATAC-3' | |
| 3' Primer: | 5'-ATTGCGGCCGCGGCCTTGAGAAATGTTTACCA-3' | |
| D.mel fasta: | dmel unflanked | |
| pCRM region: | genomic region | |
| Chrom arm: | 3R | |
| pCRM start: | 4,944,225 | |
| pCRM end: | 4,945,690 | |
| pCRM len: | 1,466 | |
| D.pse region homologous: | 1 | |
| D.pse fasta: | dpse unflanked | |
| dpse arm: | Dpse_3213126_1_55976 | |
| dpse start: | 28,639 | |
| dpse end: | 27,255 | |
| dpse len: | 1,385 | |
| Flanked D.mel fasta: | dmel flanked | |
| Flanked D.pse fasta: | dpse flanked | |
| LAGAN alignment (readable): | alignment | |
| LAGAN alignment (mfa): | alignment | |
| D.mel binding site xml: | xml | |
| overall site conservation z-score: | 1.3 | |
| Percent identity: | 52.0% | |
| D.mel sites: | 18 | |
| D.pse sites: | 10 | |
| Aligned sites: | 1 | |
| Aligned + preserved sites: | 8 | |
| D.mel site dens: | 12.3 | |
| D.pse site dens: | 7.2 | |
| Aligned site dens: | 0.7 | |
| Aligned + preserved site dens: | 5.4 | |
| pCRM position relative to 5' gene: | within_intron | |
| pCRM position 5' gene relative: | 117,069 | |
| 5' gene CG: | CG9755 | |
| 5' gene: | pum | |
| 5' gene insitu: | pum insitu | |
| 5' gene flybase: | pum flybase | |
| 5' gene start: | 5,062,759 | |
| 5' gene end: | 4,895,489 | |
| 5' gene txl start: | 5,059,599 | |
| pCRM position 3' gene relative: | within_intron | |
| pCRM position relative to 3' gene: | 117,069 | |
| 3' gene CG: | CG9755 | |
| 3' gene: | pum | |
| 3' gene insitu: | pum insitu | |
| 3' gene flybase: | pum flybase | |
| 3' gene start: | 5,062,759 | |
| 3' gene end: | 4,895,489 | |
| 3' gene txl start: | 5,059,599 | |