pCRM CE8046

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
CE8046
Overlaps:
abd-A iab2
Reference:
Simon, 1990
Berman 2002 ID:
Crm Activity:
positive
5' Primer:
3' Primer:

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R
pCRM start:
12,636,248
pCRM end:
12,637,991
pCRM len:
1,744

D.pse region homologous:
1
D.pse fasta:
dpse unflanked
dpse arm:
3,212,236
dpse start:
427,433
dpse end:
428,958
dpse len:
1,526

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.4

Percent identity:
59.5%

D.mel sites:
10
D.pse sites:
7
Aligned sites:
6
Aligned + preserved sites:
6

D.mel site dens:
5.7
D.pse site dens:
4.6
Aligned site dens:
3.4
Aligned + preserved site dens:
3.4

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
17,797
5' gene CG:
CG10325
5' gene:
abd-A
5' gene insitu:
abd-A insitu
5' gene flybase:
abd-A flybase
5' gene start:
12,655,788
5' gene end:
12,633,361
5' gene txl start:
12,652,964

pCRM position 3' gene relative:
within_intron
pCRM position relative to 3' gene:
17,797
3' gene CG:
CG10325
3' gene:
abd-A
3' gene insitu:
abd-A insitu
3' gene flybase:
abd-A flybase
3' gene start:
12,655,788
3' gene end:
12,633,361
3' gene txl start:
12,652,964