pCRM CE8047

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
CE8047
Overlaps:
spalt early enhancer
Reference:
Kuhnlein, 1994
Berman 2002 ID:
Crm Activity:
positive
5' Primer:
3' Primer:

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L
pCRM start:
11,444,510
pCRM end:
11,445,024
pCRM len:
515

D.pse region homologous:
1
D.pse fasta:
dpse unflanked
dpse arm:
3,212,177
dpse start:
8,703
dpse end:
8,166
dpse len:
538

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.6

Percent identity:
70.3%

D.mel sites:
6
D.pse sites:
5
Aligned sites:
3
Aligned + preserved sites:
4

D.mel site dens:
11.7
D.pse site dens:
9.3
Aligned site dens:
5.8
Aligned + preserved site dens:
7.8

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-10,036
5' gene CG:
CG6464
5' gene:
salm
5' gene insitu:
salm insitu
5' gene flybase:
salm flybase
5' gene start:
11,434,474
5' gene end:
11,423,181
5' gene txl start:
11,434,049

pCRM position 3' gene relative:
upstream
pCRM position relative to 3' gene:
-30,035
3' gene CG:
CG4922
3' gene:
sala
3' gene insitu:
sala insitu
3' gene flybase:
sala flybase
3' gene start:
11,475,059
3' gene end:
11,475,826
3' gene txl start:
11,475,080