pCRM CE8048
| CRM: |
| CE8048 |
|---|
| Overlaps: |
| ubx PBX |
|---|
| Reference: |
| Qian, 1991 |
|---|
| Berman 2002 ID: |
| |
|---|
| Crm Activity: |
| positive |
|---|
| 5' Primer: |
| |
|---|
| 3' Primer: |
| |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3R |
|---|
| pCRM start: |
| 12,598,979 |
|---|
| pCRM end: |
| 12,599,600 |
|---|
| pCRM len: |
| 622 |
|---|
|
| D.pse region homologous: |
| 1 |
|---|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,236 |
|---|
| dpse start: |
| 384,055 |
|---|
| dpse end: |
| 384,770 |
|---|
| dpse len: |
| 716 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 5.4 |
|---|
|
| Percent identity: |
| 68.2% |
|---|
|
| D.mel sites: |
| 10 |
|---|
| D.pse sites: |
| 8 |
|---|
| Aligned sites: |
| 6 |
|---|
| Aligned + preserved sites: |
| 8 |
|---|
|
| D.mel site dens: |
| 16.1 |
|---|
| D.pse site dens: |
| 11.2 |
|---|
| Aligned site dens: |
| 9.6 |
|---|
| Aligned + preserved site dens: |
| 12.9 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -21,850 |
|---|
| 5' gene CG: |
| CG31275 |
|---|
| 5' gene: |
| CG31275 |
|---|
| 5' gene insitu: |
| CG31275 insitu |
|---|
| 5' gene flybase: |
| CG31275 flybase |
|---|
| 5' gene start: |
| 12,577,129 |
|---|
| 5' gene end: |
| 12,576,474 |
|---|
| 5' gene txl start: |
| 12,577,013 |
|---|
|
| pCRM position 3' gene relative: |
| upstream |
|---|
| pCRM position relative to 3' gene: |
| -14,450 |
|---|
| 3' gene CG: |
| CG3853 |
|---|
| 3' gene: |
| Glut3 |
|---|
| 3' gene insitu: |
| Glut3 insitu |
|---|
| 3' gene flybase: |
| Glut3 flybase |
|---|
| 3' gene start: |
| 12,614,050 |
|---|
| 3' gene end: |
| 12,615,763 |
|---|
| 3' gene txl start: |
| 12,614,087 |
|---|
