| Region plot | Region plot detail | Dotplot |
| | |
| [jpg] [pdf] | [jpg] [pdf] | [jpg] [pdf] |
| CRM: | PCE7004 | |
|---|---|---|
| Overlaps: | eve stripes 4/6 | |
| Reference: | Sackerson, 1999 | |
| Berman 2002 ID: | ||
| Crm Activity: | + | |
| 5' Primer: | ||
| 3' Primer: | ||
| D.mel fasta: | dmel unflanked | |
| pCRM region: | genomic region | |
| Chrom arm: | 2R | |
| pCRM start: | 5,044,597 | |
| pCRM end: | 5,045,395 | |
| pCRM len: | 799 | |
| D.pse region homologous: | 1 | |
| D.pse fasta: | dpse unflanked | |
| dpse arm: | Dpse_3213009_3212129_1_41218 | |
| dpse start: | 21,774 | |
| dpse end: | 22,776 | |
| dpse len: | 1,003 | |
| Flanked D.mel fasta: | dmel flanked | |
| Flanked D.pse fasta: | dpse flanked | |
| LAGAN alignment (readable): | alignment | |
| LAGAN alignment (mfa): | alignment | |
| D.mel binding site xml: | xml | |
| overall site conservation z-score: | 10.9 | |
| Percent identity: | 70.0% | |
| D.mel sites: | 20 | |
| D.pse sites: | 18 | |
| Aligned sites: | 13 | |
| Aligned + preserved sites: | 17 | |
| D.mel site dens: | 25.0 | |
| D.pse site dens: | 17.9 | |
| Aligned site dens: | 16.3 | |
| Aligned + preserved site dens: | 21.3 | |
| pCRM position relative to 5' gene: | downstream | |
| pCRM position 5' gene relative: | 4,874 | |
| 5' gene CG: | CG2328 | |
| 5' gene: | eve | |
| 5' gene insitu: | eve insitu | |
| 5' gene flybase: | eve flybase | |
| 5' gene start: | 5,039,723 | |
| 5' gene end: | 5,041,412 | |
| 5' gene txl start: | 5,040,047 | |
| pCRM position 3' gene relative: | upstream | |
| pCRM position relative to 3' gene: | -4,398 | |
| 3' gene CG: | CG2331 | |
| 3' gene: | TER94 | |
| 3' gene insitu: | TER94 insitu | |
| 3' gene flybase: | TER94 flybase | |
| 3' gene start: | 5,049,793 | |
| 3' gene end: | 5,054,196 | |
| 3' gene txl start: | 5,049,919 | |