pCRM PCE7005

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Region plotRegion plot detailDotplot
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CRM:
PCE7005
Overlaps:
hairy stripe 7
Reference:
Pankratz, 1990
Berman 2002 ID:
Crm Activity:
+
5' Primer:
3' Primer:

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L
pCRM start:
8,624,351
pCRM end:
8,625,245
pCRM len:
895

D.pse region homologous:
1
D.pse fasta:
dpse unflanked
dpse arm:
Dpse_3212377_1_51998
dpse start:
24,614
dpse end:
25,482
dpse len:
869

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
9.4

Percent identity:
65.7%

D.mel sites:
20
D.pse sites:
16
Aligned sites:
12
Aligned + preserved sites:
16

D.mel site dens:
22.4
D.pse site dens:
18.4
Aligned site dens:
13.4
Aligned + preserved site dens:
17.9

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
16,118
5' gene CG:
CG6486
5' gene:
CG6486
5' gene insitu:
CG6486 insitu
5' gene flybase:
CG6486 flybase
5' gene start:
8,608,233
5' gene end:
8,609,426
5' gene txl start:
8,608,256

pCRM position 3' gene relative:
upstream
pCRM position relative to 3' gene:
-9,423
3' gene CG:
CG6494
3' gene:
h
3' gene insitu:
h insitu
3' gene flybase:
h flybase
3' gene start:
8,634,668
3' gene end:
8,637,949
3' gene txl start:
8,634,959