pCRM PCE7008

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Region plotRegion plot detailDotplot
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CRM:
PCE7008
Overlaps:
kni upstream
Reference:
Pankratz, 1989
Berman 2002 ID:
Crm Activity:
+
5' Primer:
3' Primer:

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L
pCRM start:
20,615,070
pCRM end:
20,616,425
pCRM len:
1,356

D.pse region homologous:
1
D.pse fasta:
dpse unflanked
dpse arm:
Dpse_3213110_1_51190
dpse start:
23,760
dpse end:
25,413
dpse len:
1,654

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
15.6

Percent identity:
68.3%

D.mel sites:
33
D.pse sites:
31
Aligned sites:
24
Aligned + preserved sites:
30

D.mel site dens:
24.3
D.pse site dens:
18.7
Aligned site dens:
17.7
Aligned + preserved site dens:
22.1

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-1,169
5' gene CG:
CG4717
5' gene:
kni
5' gene insitu:
kni insitu
5' gene flybase:
kni flybase
5' gene start:
20,613,901
5' gene end:
20,610,867
5' gene txl start:
20,612,878

pCRM position 3' gene relative:
downstream
pCRM position relative to 3' gene:
21,311
3' gene CG:
CG13253
3' gene:
CG13253
3' gene insitu:
CG13253 insitu
3' gene flybase:
CG13253 flybase
3' gene start:
20,637,736
3' gene end:
20,635,332
3' gene txl start:
20,635,683