| Region plot | Region plot detail | Dotplot |
| | |
| [jpg] [pdf] | [jpg] [pdf] | [jpg] [pdf] |
| CRM: | PCE7009 | |
|---|---|---|
| Overlaps: | hb HZ1.4 | |
| Reference: | Tautz, 1988 | |
| Berman 2002 ID: | ||
| Crm Activity: | + | |
| 5' Primer: | ||
| 3' Primer: | ||
| D.mel fasta: | dmel unflanked | |
| pCRM region: | genomic region | |
| Chrom arm: | 3R | |
| pCRM start: | 4,526,315 | |
| pCRM end: | 4,527,521 | |
| pCRM len: | 1,207 | |
| D.pse region homologous: | 1 | |
| D.pse fasta: | dpse unflanked | |
| dpse arm: | Dpse_3213225_3212440_1_37623 | |
| dpse start: | 21,040 | |
| dpse end: | 22,422 | |
| dpse len: | 1,383 | |
| Flanked D.mel fasta: | dmel flanked | |
| Flanked D.pse fasta: | dpse flanked | |
| LAGAN alignment (readable): | alignment | |
| LAGAN alignment (mfa): | alignment | |
| D.mel binding site xml: | xml | |
| overall site conservation z-score: | 11.3 | |
| Percent identity: | 68.6% | |
| D.mel sites: | 24 | |
| D.pse sites: | 23 | |
| Aligned sites: | 17 | |
| Aligned + preserved sites: | 21 | |
| D.mel site dens: | 19.9 | |
| D.pse site dens: | 16.6 | |
| Aligned site dens: | 14.1 | |
| Aligned + preserved site dens: | 17.4 | |
| pCRM position relative to 5' gene: | upstream | |
| pCRM position 5' gene relative: | -2,760 | |
| 5' gene CG: | CG9786 | |
| 5' gene: | hb | |
| 5' gene insitu: | hb insitu | |
| 5' gene flybase: | hb flybase | |
| 5' gene start: | 4,523,555 | |
| 5' gene end: | 4,517,052 | |
| 5' gene txl start: | 4,519,891 | |
| pCRM position 3' gene relative: | within_intron | |
| pCRM position relative to 3' gene: | 403 | |
| 3' gene CG: | CG8112 | |
| 3' gene: | CG8112 | |
| 3' gene insitu: | CG8112 insitu | |
| 3' gene flybase: | CG8112 flybase | |
| 3' gene start: | 4,526,718 | |
| 3' gene end: | 4,541,005 | |
| 3' gene txl start: | 4,538,858 | |