| CRM: |
| PCE8001 |
|---|
| Overlaps: |
| gt posterior domain |
|---|
| Reference: |
| Berman, 2002 |
|---|
| Berman 2002 ID: |
| 1 |
|---|
| Crm Activity: |
| + |
|---|
| 5' Primer: |
| 5'-TTAGGCGCGCCAGAAACTTACCATCACTTCG-3' |
|---|
| 3' Primer: |
| 5'-ATTGCGGCCGCCCCATTCAGGGGGATTGGG-3' |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| X |
|---|
| pCRM start: |
| 2,187,439 |
|---|
| pCRM end: |
| 2,188,382 |
|---|
| pCRM len: |
| 944 |
|---|
|
| D.pse region homologous: |
| 1 |
|---|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| Dpse_3212166_3212206_3213217_1_45443 |
|---|
| dpse start: |
| 16,447 |
|---|
| dpse end: |
| 17,538 |
|---|
| dpse len: |
| 1,092 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 11.1 |
|---|
|
| Percent identity: |
| 63.8% |
|---|
|
| D.mel sites: |
| 23 |
|---|
| D.pse sites: |
| 19 |
|---|
| Aligned sites: |
| 15 |
|---|
| Aligned + preserved sites: |
| 18 |
|---|
|
| D.mel site dens: |
| 24.4 |
|---|
| D.pse site dens: |
| 17.4 |
|---|
| Aligned site dens: |
| 15.9 |
|---|
| Aligned + preserved site dens: |
| 19.1 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -1,704 |
|---|
| 5' gene CG: |
| CG7952 |
|---|
| 5' gene: |
| gt |
|---|
| 5' gene insitu: |
| gt insitu |
|---|
| 5' gene flybase: |
| gt flybase |
|---|
| 5' gene start: |
| 2,185,735 |
|---|
| 5' gene end: |
| 2,183,878 |
|---|
| 5' gene txl start: |
| 2,185,624 |
|---|
|
| pCRM position 3' gene relative: |
| downstream |
|---|
| pCRM position relative to 3' gene: |
| 12,366 |
|---|
| 3' gene CG: |
| CG7925 |
|---|
| 3' gene: |
| tko |
|---|
| 3' gene insitu: |
| tko insitu |
|---|
| 3' gene flybase: |
| tko flybase |
|---|
| 3' gene start: |
| 2,200,748 |
|---|
| 3' gene end: |
| 2,199,078 |
|---|
| 3' gene txl start: |
| 2,200,557 |
|---|
