| Region plot | Region plot detail | Dotplot |
| | |
| [jpg] [pdf] | [jpg] [pdf] | [jpg] [pdf] |
| CRM: | PCE8002 | |
|---|---|---|
| Overlaps: | cluster_at_4B | |
| Reference: | Berman, 2002 | |
| Berman 2002 ID: | 10 | |
| Crm Activity: | - | |
| 5' Primer: | 5'-TTAGGCGCGCCTCTTCACGACGAGGACGA-3' | |
| 3' Primer: | 5'-ATTGCGGCCGCGGACAAGTGCGCCCATTA-3' | |
| D.mel fasta: | dmel unflanked | |
| pCRM region: | genomic region | |
| Chrom arm: | X | |
| pCRM start: | 4,124,119 | |
| pCRM end: | 4,125,459 | |
| pCRM len: | 1,341 | |
| D.pse region homologous: | 0 | |
| D.pse fasta: | dpse unflanked | |
| dpse arm: | Dpse_3212444_1_57148 | |
| dpse start: | 27,381 | |
| dpse end: | 27,452 | |
| dpse len: | 72 | |
| Flanked D.mel fasta: | dmel flanked | |
| Flanked D.pse fasta: | dpse flanked | |
| LAGAN alignment (readable): | alignment | |
| LAGAN alignment (mfa): | alignment | |
| D.mel binding site xml: | xml | |
| overall site conservation z-score: | -1.0 | |
| Percent identity: | 3.5% | |
| D.mel sites: | 28 | |
| D.pse sites: | 0 | |
| Aligned sites: | 0 | |
| Aligned + preserved sites: | 0 | |
| D.mel site dens: | 20.9 | |
| D.pse site dens: | 0 | |
| Aligned site dens: | 0 | |
| Aligned + preserved site dens: | 0 | |
| pCRM position relative to 5' gene: | downstream | |
| pCRM position 5' gene relative: | 2,032 | |
| 5' gene CG: | CG12688 | |
| 5' gene: | CG12688 | |
| 5' gene insitu: | CG12688 insitu | |
| 5' gene flybase: | CG12688 flybase | |
| 5' gene start: | 4,122,087 | |
| 5' gene end: | 4,123,785 | |
| 5' gene txl start: | 4,122,087 | |
| pCRM position 3' gene relative: | downstream | |
| pCRM position relative to 3' gene: | 3,408 | |
| 3' gene CG: | CG32773 | |
| 3' gene: | CG32773 | |
| 3' gene insitu: | CG32773 insitu | |
| 3' gene flybase: | CG32773 flybase | |
| 3' gene start: | 4,128,867 | |
| 3' gene end: | 4,128,447 | |
| 3' gene txl start: | 4,128,801 | |