pCRM PCE8003

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8003
Overlaps:
cluster_at_5C.1
Reference:
Berman, 2002
Berman 2002 ID:
11
Crm Activity:
-
5' Primer:
5'-TTAGGCGCGCCCACACCAACACTAGCGCACAG-3'
3' Primer:
5'-ATTGCGGCCGCCGTTGTTCTCGCCGAAGGTT-3'

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X
pCRM start:
5,658,504
pCRM end:
5,659,131
pCRM len:
628

D.pse region homologous:
0
D.pse fasta:
dpse unflanked
dpse arm:
Dpse_3208392_3212169_1_53199
dpse start:
28,460
dpse end:
28,588
dpse len:
129

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
-1.0

Percent identity:
11.9%

D.mel sites:
15
D.pse sites:
0
Aligned sites:
0
Aligned + preserved sites:
0

D.mel site dens:
23.9
D.pse site dens:
0
Aligned site dens:
0
Aligned + preserved site dens:
0

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
952
5' gene CG:
CG3726
5' gene:
CG3726
5' gene insitu:
CG3726 insitu
5' gene flybase:
CG3726 flybase
5' gene start:
5,657,552
5' gene end:
5,682,046
5' gene txl start:
5,679,045

pCRM position 3' gene relative:
within_intron
pCRM position relative to 3' gene:
952
3' gene CG:
CG3726
3' gene:
CG3726
3' gene insitu:
CG3726 insitu
3' gene flybase:
CG3726 flybase
3' gene start:
5,657,552
3' gene end:
5,682,046
3' gene txl start:
5,679,045