pCRM PCE8004

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8004
Overlaps:
cluster_at_5C.2
Reference:
Berman, 2002
Berman 2002 ID:
12
Crm Activity:
-
5' Primer:
5'-TTAGGCGCGCCAATGGCATTTCGCTGTTC-3'
3' Primer:
5'-ATTGCGGCCGCGGCGGTGTTGGCATAA-3'

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X
pCRM start:
5,674,913
pCRM end:
5,675,606
pCRM len:
694

D.pse region homologous:
0
D.pse fasta:
dpse unflanked
dpse arm:
Dpse_3212169_1_41126
dpse start:
9,380
dpse end:
9,430
dpse len:
51

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
0.2

Percent identity:
4.8%

D.mel sites:
15
D.pse sites:
2
Aligned sites:
1
Aligned + preserved sites:
2

D.mel site dens:
21.6
D.pse site dens:
39.2
Aligned site dens:
1.4
Aligned + preserved site dens:
2.9

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
17,361
5' gene CG:
CG3726
5' gene:
CG3726
5' gene insitu:
CG3726 insitu
5' gene flybase:
CG3726 flybase
5' gene start:
5,657,552
5' gene end:
5,682,046
5' gene txl start:
5,679,045

pCRM position 3' gene relative:
upstream
pCRM position relative to 3' gene:
-7,377
3' gene CG:
CG12728
3' gene:
CG12728
3' gene insitu:
CG12728 insitu
3' gene flybase:
CG12728 flybase
3' gene start:
5,682,983
3' gene end:
5,684,763
3' gene txl start:
5,683,058