| Region plot | Region plot detail | Dotplot |
| | |
| [jpg] [pdf] | [jpg] [pdf] | [jpg] [pdf] |
| CRM: | PCE8005 | |
|---|---|---|
| Overlaps: | cluster_at_7A | |
| Reference: | Berman, 2002 | |
| Berman 2002 ID: | 7 | |
| Crm Activity: | amb. | |
| 5' Primer: | 5'-TTAGGCGCGCCGGCGATTCGGCAGTATCCAA-3' | |
| 3' Primer: | 5'-ATTGCGGCCGCCTGGCGGCTTCTCCTTCGTAT-3' | |
| D.mel fasta: | dmel unflanked | |
| pCRM region: | genomic region | |
| Chrom arm: | X | |
| pCRM start: | 6,996,209 | |
| pCRM end: | 6,996,756 | |
| pCRM len: | 548 | |
| D.pse region homologous: | 1 | |
| D.pse fasta: | dpse unflanked | |
| dpse arm: | Dpse_3213012_1_61104 | |
| dpse start: | 28,638 | |
| dpse end: | 29,456 | |
| dpse len: | 819 | |
| Flanked D.mel fasta: | dmel flanked | |
| Flanked D.pse fasta: | dpse flanked | |
| LAGAN alignment (readable): | alignment | |
| LAGAN alignment (mfa): | alignment | |
| D.mel binding site xml: | xml | |
| overall site conservation z-score: | 1.0 | |
| Percent identity: | 53.8% | |
| D.mel sites: | 13 | |
| D.pse sites: | 4 | |
| Aligned sites: | 2 | |
| Aligned + preserved sites: | 2 | |
| D.mel site dens: | 23.7 | |
| D.pse site dens: | 4.9 | |
| Aligned site dens: | 3.6 | |
| Aligned + preserved site dens: | 3.6 | |
| pCRM position relative to 5' gene: | upstream | |
| pCRM position 5' gene relative: | -17,671 | |
| 5' gene CG: | CG32725 | |
| 5' gene: | CG32725 | |
| 5' gene insitu: | CG32725 insitu | |
| 5' gene flybase: | CG32725 flybase | |
| 5' gene start: | 6,978,538 | |
| 5' gene end: | 6,977,810 | |
| 5' gene txl start: | 6,978,113 | |
| pCRM position 3' gene relative: | upstream | |
| pCRM position relative to 3' gene: | -10,524 | |
| 3' gene CG: | CG1958 | |
| 3' gene: | CG1958 | |
| 3' gene insitu: | CG1958 insitu | |
| 3' gene flybase: | CG1958 flybase | |
| 3' gene start: | 7,007,280 | |
| 3' gene end: | 7,008,258 | |
| 3' gene txl start: | 7,007,417 | |