| Region plot | Region plot detail | Dotplot |
| | |
| [jpg] [pdf] | [jpg] [pdf] | [jpg] [pdf] |
| CRM: | PCE8006 | |
|---|---|---|
| Overlaps: | cluster_at_7B | |
| Reference: | Berman, 2002 | |
| Berman 2002 ID: | 13 | |
| Crm Activity: | - | |
| 5' Primer: | 5'-TTAGGCGCGCCCTGCTGCTATGCGTGTAATTC-3' | |
| 3' Primer: | 5'-ATTGCGGCCGCTGCGTGTCCGTTAAACCA-3' | |
| D.mel fasta: | dmel unflanked | |
| pCRM region: | genomic region | |
| Chrom arm: | X | |
| pCRM start: | 7,239,486 | |
| pCRM end: | 7,240,124 | |
| pCRM len: | 639 | |
| D.pse region homologous: | 1 | |
| D.pse fasta: | dpse unflanked | |
| dpse arm: | Dpse_3213012_1_57731 | |
| dpse start: | 25,639 | |
| dpse end: | 26,301 | |
| dpse len: | 663 | |
| Flanked D.mel fasta: | dmel flanked | |
| Flanked D.pse fasta: | dpse flanked | |
| LAGAN alignment (readable): | alignment | |
| LAGAN alignment (mfa): | alignment | |
| D.mel binding site xml: | xml | |
| overall site conservation z-score: | 6.4 | |
| Percent identity: | 69.0% | |
| D.mel sites: | 15 | |
| D.pse sites: | 9 | |
| Aligned sites: | 8 | |
| Aligned + preserved sites: | 8 | |
| D.mel site dens: | 23.5 | |
| D.pse site dens: | 13.6 | |
| Aligned site dens: | 12.5 | |
| Aligned + preserved site dens: | 12.5 | |
| pCRM position relative to 5' gene: | downstream | |
| pCRM position 5' gene relative: | 46,902 | |
| 5' gene CG: | CG11368 | |
| 5' gene: | CG11368 | |
| 5' gene insitu: | CG11368 insitu | |
| 5' gene flybase: | CG11368 flybase | |
| 5' gene start: | 7,192,584 | |
| 5' gene end: | 7,193,040 | |
| 5' gene txl start: | 7,192,613 | |
| pCRM position 3' gene relative: | downstream | |
| pCRM position relative to 3' gene: | 13,096 | |
| 3' gene CG: | CG32719 | |
| 3' gene: | CG32719 | |
| 3' gene insitu: | CG32719 insitu | |
| 3' gene flybase: | CG32719 flybase | |
| 3' gene start: | 7,253,220 | |
| 3' gene end: | 7,249,267 | |
| 3' gene txl start: | 7,253,220 | |