pCRM PCE8007

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8007
Overlaps:
cluster_at_7F
Reference:
Berman, 2002
Berman 2002 ID:
14
Crm Activity:
-
5' Primer:
5'-TTAGGCGCGCCTAGCGTAGATTTTTAACCCAT-3'
3' Primer:
5'-ATTGCGGCCGCGGAACACATTTGGGATATG-3'

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X
pCRM start:
8,350,658
pCRM end:
8,351,315
pCRM len:
658

D.pse region homologous:
0
D.pse fasta:
dpse unflanked
dpse arm:
Dpse_3213180_3212715_3211870_1_47844
dpse start:
24,542
dpse end:
24,670
dpse len:
129

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
-1.0

Percent identity:
13.2%

D.mel sites:
15
D.pse sites:
0
Aligned sites:
0
Aligned + preserved sites:
0

D.mel site dens:
22.8
D.pse site dens:
0
Aligned site dens:
0
Aligned + preserved site dens:
0

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-5,486
5' gene CG:
CG12109
5' gene:
Caf1-180
5' gene insitu:
Caf1-180 insitu
5' gene flybase:
Caf1-180 flybase
5' gene start:
8,345,172
5' gene end:
8,341,306
5' gene txl start:
8,345,134

pCRM position 3' gene relative:
downstream
pCRM position relative to 3' gene:
38,281
3' gene CG:
CG12154
3' gene:
oc
3' gene insitu:
oc insitu
3' gene flybase:
oc flybase
3' gene start:
8,389,596
3' gene end:
8,370,285
3' gene txl start:
8,381,592