| CRM: |
| PCE8007 |
|---|
| Overlaps: |
| cluster_at_7F |
|---|
| Reference: |
| Berman, 2002 |
|---|
| Berman 2002 ID: |
| 14 |
|---|
| Crm Activity: |
| - |
|---|
| 5' Primer: |
| 5'-TTAGGCGCGCCTAGCGTAGATTTTTAACCCAT-3' |
|---|
| 3' Primer: |
| 5'-ATTGCGGCCGCGGAACACATTTGGGATATG-3' |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| X |
|---|
| pCRM start: |
| 8,350,658 |
|---|
| pCRM end: |
| 8,351,315 |
|---|
| pCRM len: |
| 658 |
|---|
|
| D.pse region homologous: |
| 0 |
|---|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| Dpse_3213180_3212715_3211870_1_47844 |
|---|
| dpse start: |
| 24,542 |
|---|
| dpse end: |
| 24,670 |
|---|
| dpse len: |
| 129 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| -1.0 |
|---|
|
| Percent identity: |
| 13.2% |
|---|
|
| D.mel sites: |
| 15 |
|---|
| D.pse sites: |
| 0 |
|---|
| Aligned sites: |
| 0 |
|---|
| Aligned + preserved sites: |
| 0 |
|---|
|
| D.mel site dens: |
| 22.8 |
|---|
| D.pse site dens: |
| 0 |
|---|
| Aligned site dens: |
| 0 |
|---|
| Aligned + preserved site dens: |
| 0 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -5,486 |
|---|
| 5' gene CG: |
| CG12109 |
|---|
| 5' gene: |
| Caf1-180 |
|---|
| 5' gene insitu: |
| Caf1-180 insitu |
|---|
| 5' gene flybase: |
| Caf1-180 flybase |
|---|
| 5' gene start: |
| 8,345,172 |
|---|
| 5' gene end: |
| 8,341,306 |
|---|
| 5' gene txl start: |
| 8,345,134 |
|---|
|
| pCRM position 3' gene relative: |
| downstream |
|---|
| pCRM position relative to 3' gene: |
| 38,281 |
|---|
| 3' gene CG: |
| CG12154 |
|---|
| 3' gene: |
| oc |
|---|
| 3' gene insitu: |
| oc insitu |
|---|
| 3' gene flybase: |
| oc flybase |
|---|
| 3' gene start: |
| 8,389,596 |
|---|
| 3' gene end: |
| 8,370,285 |
|---|
| 3' gene txl start: |
| 8,381,592 |
|---|
