| Region plot | Region plot detail | Dotplot |
| | |
| [jpg] [pdf] | [jpg] [pdf] | [jpg] [pdf] |
| CRM: | PCE8008 | |
|---|---|---|
| Overlaps: | cluster_at_8F | |
| Reference: | Berman, 2002 | |
| Berman 2002 ID: | 15 | |
| Crm Activity: | - | |
| 5' Primer: | 5'-TTAGGCGCGCCACTCTCTGGAACTGCGAAACA-3' | |
| 3' Primer: | 5'-ATTGCGGCCGCTGGCCCAAACGAACGA-3' | |
| D.mel fasta: | dmel unflanked | |
| pCRM region: | genomic region | |
| Chrom arm: | X | |
| pCRM start: | 9,457,631 | |
| pCRM end: | 9,458,375 | |
| pCRM len: | 745 | |
| D.pse region homologous: | 1 | |
| D.pse fasta: | dpse unflanked | |
| dpse arm: | Dpse_3212341_1_51935 | |
| dpse start: | 24,374 | |
| dpse end: | 25,089 | |
| dpse len: | 716 | |
| Flanked D.mel fasta: | dmel flanked | |
| Flanked D.pse fasta: | dpse flanked | |
| LAGAN alignment (readable): | alignment | |
| LAGAN alignment (mfa): | alignment | |
| D.mel binding site xml: | xml | |
| overall site conservation z-score: | 0.2 | |
| Percent identity: | 57.7% | |
| D.mel sites: | 14 | |
| D.pse sites: | 2 | |
| Aligned sites: | 1 | |
| Aligned + preserved sites: | 2 | |
| D.mel site dens: | 18.8 | |
| D.pse site dens: | 2.8 | |
| Aligned site dens: | 1.3 | |
| Aligned + preserved site dens: | 2.7 | |
| pCRM position relative to 5' gene: | downstream | |
| pCRM position 5' gene relative: | 24,460 | |
| 5' gene CG: | CG12653 | |
| 5' gene: | btd | |
| 5' gene insitu: | btd insitu | |
| 5' gene flybase: | btd flybase | |
| 5' gene start: | 9,433,171 | |
| 5' gene end: | 9,436,557 | |
| 5' gene txl start: | 9,433,657 | |
| pCRM position 3' gene relative: | upstream | |
| pCRM position relative to 3' gene: | -33,567 | |
| 3' gene CG: | CG1343 | |
| 3' gene: | Sp1 | |
| 3' gene insitu: | Sp1 insitu | |
| 3' gene flybase: | Sp1 flybase | |
| 3' gene start: | 9,491,942 | |
| 3' gene end: | 9,494,253 | |
| 3' gene txl start: | 9,491,942 | |