pCRM PCE8008

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8008
Overlaps:
cluster_at_8F
Reference:
Berman, 2002
Berman 2002 ID:
15
Crm Activity:
-
5' Primer:
5'-TTAGGCGCGCCACTCTCTGGAACTGCGAAACA-3'
3' Primer:
5'-ATTGCGGCCGCTGGCCCAAACGAACGA-3'

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X
pCRM start:
9,457,631
pCRM end:
9,458,375
pCRM len:
745

D.pse region homologous:
1
D.pse fasta:
dpse unflanked
dpse arm:
Dpse_3212341_1_51935
dpse start:
24,374
dpse end:
25,089
dpse len:
716

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
0.2

Percent identity:
57.7%

D.mel sites:
14
D.pse sites:
2
Aligned sites:
1
Aligned + preserved sites:
2

D.mel site dens:
18.8
D.pse site dens:
2.8
Aligned site dens:
1.3
Aligned + preserved site dens:
2.7

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
24,460
5' gene CG:
CG12653
5' gene:
btd
5' gene insitu:
btd insitu
5' gene flybase:
btd flybase
5' gene start:
9,433,171
5' gene end:
9,436,557
5' gene txl start:
9,433,657

pCRM position 3' gene relative:
upstream
pCRM position relative to 3' gene:
-33,567
3' gene CG:
CG1343
3' gene:
Sp1
3' gene insitu:
Sp1 insitu
3' gene flybase:
Sp1 flybase
3' gene start:
9,491,942
3' gene end:
9,494,253
3' gene txl start:
9,491,942