| Region plot | Region plot detail | Dotplot |
| | |
| [jpg] [pdf] | [jpg] [pdf] | [jpg] [pdf] |
| CRM: | PCE8009 | |
|---|---|---|
| Overlaps: | cluster_at_12E | |
| Reference: | Berman, 2002 | |
| Berman 2002 ID: | 16 | |
| Crm Activity: | - | |
| 5' Primer: | 5'-TTAGGCGCGCCTATCCGAGCATCCGCCTAC-3' | |
| 3' Primer: | 5'-ATTGCGGCCGCCGGCGAAAGGACCTACCAAC-3' | |
| D.mel fasta: | dmel unflanked | |
| pCRM region: | genomic region | |
| Chrom arm: | X | |
| pCRM start: | 14,146,556 | |
| pCRM end: | 14,147,218 | |
| pCRM len: | 663 | |
| D.pse region homologous: | 0 | |
| D.pse fasta: | dpse unflanked | |
| dpse arm: | Dpse_3212152_1_43438 | |
| dpse start: | 24,716 | |
| dpse end: | 25,353 | |
| dpse len: | 638 | |
| Flanked D.mel fasta: | dmel flanked | |
| Flanked D.pse fasta: | dpse flanked | |
| LAGAN alignment (readable): | alignment | |
| LAGAN alignment (mfa): | alignment | |
| D.mel binding site xml: | xml | |
| overall site conservation z-score: | 2.4 | |
| Percent identity: | 40.3% | |
| D.mel sites: | 15 | |
| D.pse sites: | 5 | |
| Aligned sites: | 3 | |
| Aligned + preserved sites: | 5 | |
| D.mel site dens: | 22.6 | |
| D.pse site dens: | 7.8 | |
| Aligned site dens: | 4.5 | |
| Aligned + preserved site dens: | 7.5 | |
| pCRM position relative to 5' gene: | within_intron | |
| pCRM position 5' gene relative: | 93,317 | |
| 5' gene CG: | CG32600 | |
| 5' gene: | CG32600 | |
| 5' gene insitu: | CG32600 insitu | |
| 5' gene flybase: | CG32600 flybase | |
| 5' gene start: | 14,053,239 | |
| 5' gene end: | 14,193,385 | |
| 5' gene txl start: | 14,139,286 | |
| pCRM position 3' gene relative: | within_intron | |
| pCRM position relative to 3' gene: | 93,317 | |
| 3' gene CG: | CG32600 | |
| 3' gene: | CG32600 | |
| 3' gene insitu: | CG32600 insitu | |
| 3' gene flybase: | CG32600 flybase | |
| 3' gene start: | 14,053,239 | |
| 3' gene end: | 14,193,385 | |
| 3' gene txl start: | 14,139,286 | |