| Region plot | Region plot detail | Dotplot |
| | |
| [jpg] [pdf] | [jpg] [pdf] | [jpg] [pdf] |
| CRM: | PCE8010 | |
|---|---|---|
| Overlaps: | odd stripes 3/6 | |
| Reference: | Berman, 2004 | |
| Berman 2002 ID: | 2 | |
| Crm Activity: | + | |
| 5' Primer: | 5'-TTAGGCGCGCCAGAGCGTAAATGGCGTACTGA-3' | |
| 3' Primer: | 5'-ATTGCGGCCGCCTTTAGCCTCGGCGTTTG-3' | |
| D.mel fasta: | dmel unflanked | |
| pCRM region: | genomic region | |
| Chrom arm: | 2L | |
| pCRM start: | 3,601,750 | |
| pCRM end: | 3,602,509 | |
| pCRM len: | 760 | |
| D.pse region homologous: | 1 | |
| D.pse fasta: | dpse unflanked | |
| dpse arm: | Dpse_3213134_1_63579 | |
| dpse start: | 26,093 | |
| dpse end: | 26,917 | |
| dpse len: | 825 | |
| Flanked D.mel fasta: | dmel flanked | |
| Flanked D.pse fasta: | dpse flanked | |
| LAGAN alignment (readable): | alignment | |
| LAGAN alignment (mfa): | alignment | |
| D.mel binding site xml: | xml | |
| overall site conservation z-score: | 10.4 | |
| Percent identity: | 70.1% | |
| D.mel sites: | 17 | |
| D.pse sites: | 19 | |
| Aligned sites: | 12 | |
| Aligned + preserved sites: | 16 | |
| D.mel site dens: | 22.4 | |
| D.pse site dens: | 23.0 | |
| Aligned site dens: | 15.8 | |
| Aligned + preserved site dens: | 21.1 | |
| pCRM position relative to 5' gene: | upstream | |
| pCRM position 5' gene relative: | -2,433 | |
| 5' gene CG: | CG3851 | |
| 5' gene: | odd | |
| 5' gene insitu: | odd insitu | |
| 5' gene flybase: | odd flybase | |
| 5' gene start: | 3,599,317 | |
| 5' gene end: | 3,596,790 | |
| 5' gene txl start: | 3,598,927 | |
| pCRM position 3' gene relative: | upstream | |
| pCRM position relative to 3' gene: | -9,351 | |
| 3' gene CG: | CG2788 | |
| 3' gene: | Dot | |
| 3' gene insitu: | Dot insitu | |
| 3' gene flybase: | Dot flybase | |
| 3' gene start: | 3,611,860 | |
| 3' gene end: | 3,613,740 | |
| 3' gene txl start: | 3,611,986 | |