pCRM PCE8010

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8010
Overlaps:
odd stripes 3/6
Reference:
Berman, 2004
Berman 2002 ID:
2
Crm Activity:
+
5' Primer:
5'-TTAGGCGCGCCAGAGCGTAAATGGCGTACTGA-3'
3' Primer:
5'-ATTGCGGCCGCCTTTAGCCTCGGCGTTTG-3'

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L
pCRM start:
3,601,750
pCRM end:
3,602,509
pCRM len:
760

D.pse region homologous:
1
D.pse fasta:
dpse unflanked
dpse arm:
Dpse_3213134_1_63579
dpse start:
26,093
dpse end:
26,917
dpse len:
825

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
10.4

Percent identity:
70.1%

D.mel sites:
17
D.pse sites:
19
Aligned sites:
12
Aligned + preserved sites:
16

D.mel site dens:
22.4
D.pse site dens:
23.0
Aligned site dens:
15.8
Aligned + preserved site dens:
21.1

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-2,433
5' gene CG:
CG3851
5' gene:
odd
5' gene insitu:
odd insitu
5' gene flybase:
odd flybase
5' gene start:
3,599,317
5' gene end:
3,596,790
5' gene txl start:
3,598,927

pCRM position 3' gene relative:
upstream
pCRM position relative to 3' gene:
-9,351
3' gene CG:
CG2788
3' gene:
Dot
3' gene insitu:
Dot insitu
3' gene flybase:
Dot flybase
3' gene start:
3,611,860
3' gene end:
3,613,740
3' gene txl start:
3,611,986