| Region plot | Region plot detail | Dotplot |
| | |
| [jpg] [pdf] | [jpg] [pdf] | [jpg] [pdf] |
| CRM: | PCE8011 | |
|---|---|---|
| Overlaps: | nub blastoderm | |
| Reference: | Berman, 2004 | |
| Berman 2002 ID: | 3 | |
| Crm Activity: | + | |
| 5' Primer: | 5'-TTAGGCGCGCCCATAGGTGAGTGCGAAAGGGT-3' | |
| 3' Primer: | 5'-ATTGCGGCCGCTGTGCATCAGGTGTTAAGCCA-3' | |
| D.mel fasta: | dmel unflanked | |
| pCRM region: | genomic region | |
| Chrom arm: | 2L | |
| pCRM start: | 12,605,345 | |
| pCRM end: | 12,606,039 | |
| pCRM len: | 695 | |
| D.pse region homologous: | 1 | |
| D.pse fasta: | dpse unflanked | |
| dpse arm: | Dpse_3212646_1_58383 | |
| dpse start: | 28,248 | |
| dpse end: | 29,141 | |
| dpse len: | 894 | |
| Flanked D.mel fasta: | dmel flanked | |
| Flanked D.pse fasta: | dpse flanked | |
| LAGAN alignment (readable): | alignment | |
| LAGAN alignment (mfa): | alignment | |
| D.mel binding site xml: | xml | |
| overall site conservation z-score: | 8.5 | |
| Percent identity: | 69.8% | |
| D.mel sites: | 18 | |
| D.pse sites: | 13 | |
| Aligned sites: | 10 | |
| Aligned + preserved sites: | 12 | |
| D.mel site dens: | 25.9 | |
| D.pse site dens: | 14.5 | |
| Aligned site dens: | 14.4 | |
| Aligned + preserved site dens: | 17.3 | |
| pCRM position relative to 5' gene: | downstream | |
| pCRM position 5' gene relative: | 2,687 | |
| 5' gene CG: | CG15488 | |
| 5' gene: | CG15488 | |
| 5' gene insitu: | CG15488 insitu | |
| 5' gene flybase: | CG15488 flybase | |
| 5' gene start: | 12,602,658 | |
| 5' gene end: | 12,603,090 | |
| 5' gene txl start: | 12,602,658 | |
| pCRM position 3' gene relative: | upstream | |
| pCRM position relative to 3' gene: | -1,178 | |
| 3' gene CG: | CG6246 | |
| 3' gene: | nub | |
| 3' gene insitu: | nub insitu | |
| 3' gene flybase: | nub flybase | |
| 3' gene start: | 12,607,217 | |
| 3' gene end: | 12,617,004 | |
| 3' gene txl start: | 12,607,865 | |