| CRM: |
| PCE8012 |
|---|
| Overlaps: |
| pdm2 neurogenic |
|---|
| Reference: |
| Berman, 2004 |
|---|
| Berman 2002 ID: |
| 5 |
|---|
| Crm Activity: |
| + |
|---|
| 5' Primer: |
| 5'-TTAGGCGCGCCGGAGTCGGTTGGTGTAGCG-3' |
|---|
| 3' Primer: |
| 5'-ATTGCGGCCGCGGGTTTATGGGCATTAGTTGG-3' |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 2L |
|---|
| pCRM start: |
| 12,663,878 |
|---|
| pCRM end: |
| 12,664,600 |
|---|
| pCRM len: |
| 723 |
|---|
|
| D.pse region homologous: |
| 1 |
|---|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| Dpse_3212646_3212123_3213189_1_68286 |
|---|
| dpse start: |
| 28,671 |
|---|
| dpse end: |
| 29,393 |
|---|
| dpse len: |
| 723 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 3.8 |
|---|
|
| Percent identity: |
| 72.2% |
|---|
|
| D.mel sites: |
| 14 |
|---|
| D.pse sites: |
| 8 |
|---|
| Aligned sites: |
| 4 |
|---|
| Aligned + preserved sites: |
| 8 |
|---|
|
| D.mel site dens: |
| 19.4 |
|---|
| D.pse site dens: |
| 11.1 |
|---|
| Aligned site dens: |
| 5.5 |
|---|
| Aligned + preserved site dens: |
| 11.1 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -5,839 |
|---|
| 5' gene CG: |
| CG15485 |
|---|
| 5' gene: |
| CG15485 |
|---|
| 5' gene insitu: |
| CG15485 insitu |
|---|
| 5' gene flybase: |
| CG15485 flybase |
|---|
| 5' gene start: |
| 12,658,039 |
|---|
| 5' gene end: |
| 12,656,134 |
|---|
| 5' gene txl start: |
| 12,658,039 |
|---|
|
| pCRM position 3' gene relative: |
| within_intron |
|---|
| pCRM position relative to 3' gene: |
| 2,875 |
|---|
| 3' gene CG: |
| CG12287 |
|---|
| 3' gene: |
| pdm2 |
|---|
| 3' gene insitu: |
| pdm2 insitu |
|---|
| 3' gene flybase: |
| pdm2 flybase |
|---|
| 3' gene start: |
| 12,667,475 |
|---|
| 3' gene end: |
| 12,675,182 |
|---|
| 3' gene txl start: |
| 12,667,666 |
|---|
