| Region plot | Region plot detail | Dotplot |
| | |
| [jpg] [pdf] | [jpg] [pdf] | [jpg] [pdf] |
| CRM: | PCE8013 | |
|---|---|---|
| Overlaps: | cluster_at_34E | |
| Reference: | Berman, 2002 | |
| Berman 2002 ID: | 17 | |
| Crm Activity: | - | |
| 5' Primer: | 5'-TTAGGCGCGCCAGTTGGCTTCGGGTGA-3' | |
| 3' Primer: | 5'-ATTGCGGCCGCGTGGCGATTCTAATTGTATGA-3' | |
| D.mel fasta: | dmel unflanked | |
| pCRM region: | genomic region | |
| Chrom arm: | 2L | |
| pCRM start: | 13,989,283 | |
| pCRM end: | 13,990,132 | |
| pCRM len: | 850 | |
| D.pse region homologous: | 1 | |
| D.pse fasta: | dpse unflanked | |
| dpse arm: | Dpse_3211777_1_59057 | |
| dpse start: | 29,315 | |
| dpse end: | 30,233 | |
| dpse len: | 919 | |
| Flanked D.mel fasta: | dmel flanked | |
| Flanked D.pse fasta: | dpse flanked | |
| LAGAN alignment (readable): | alignment | |
| LAGAN alignment (mfa): | alignment | |
| D.mel binding site xml: | xml | |
| overall site conservation z-score: | 4.3 | |
| Percent identity: | 60.7% | |
| D.mel sites: | 17 | |
| D.pse sites: | 8 | |
| Aligned sites: | 6 | |
| Aligned + preserved sites: | 8 | |
| D.mel site dens: | 20.0 | |
| D.pse site dens: | 8.7 | |
| Aligned site dens: | 7.1 | |
| Aligned + preserved site dens: | 9.4 | |
| pCRM position relative to 5' gene: | upstream | |
| pCRM position 5' gene relative: | -5,879 | |
| 5' gene CG: | CG8930 | |
| 5' gene: | rk | |
| 5' gene insitu: | rk insitu | |
| 5' gene flybase: | rk flybase | |
| 5' gene start: | 13,983,404 | |
| 5' gene end: | 13,964,877 | |
| 5' gene txl start: | 13,975,639 | |
| pCRM position 3' gene relative: | upstream | |
| pCRM position relative to 3' gene: | -5,767 | |
| 3' gene CG: | CG4501 | |
| 3' gene: | bgm | |
| 3' gene insitu: | bgm insitu | |
| 3' gene flybase: | bgm flybase | |
| 3' gene start: | 13,995,899 | |
| 3' gene end: | 14,001,480 | |
| 3' gene txl start: | 13,997,947 | |