| Region plot | Region plot detail | Dotplot |
| | |
| [jpg] [pdf] | [jpg] [pdf] | [jpg] [pdf] |
| CRM: | PCE8016 | |
|---|---|---|
| Overlaps: | cluster_at_55C | |
| Reference: | Berman, 2002 | |
| Berman 2002 ID: | 8 | |
| Crm Activity: | amb. | |
| 5' Primer: | 5'-TTAGGCGCGCCCAAGAAGACGCTGTCAGTTGC-3' | |
| 3' Primer: | 5'-ATTGCGGCCGCCTGTTGCCGTTCCGATTC-3' | |
| D.mel fasta: | dmel unflanked | |
| pCRM region: | genomic region | |
| Chrom arm: | 2R | |
| pCRM start: | 13,354,407 | |
| pCRM end: | 13,355,109 | |
| pCRM len: | 703 | |
| D.pse region homologous: | 1 | |
| D.pse fasta: | dpse unflanked | |
| dpse arm: | Dpse_3212407_1_50564 | |
| dpse start: | 24,616 | |
| dpse end: | 26,232 | |
| dpse len: | 1,617 | |
| Flanked D.mel fasta: | dmel flanked | |
| Flanked D.pse fasta: | dpse flanked | |
| LAGAN alignment (readable): | alignment | |
| LAGAN alignment (mfa): | alignment | |
| D.mel binding site xml: | xml | |
| overall site conservation z-score: | 2.7 | |
| Percent identity: | 55.5% | |
| D.mel sites: | 16 | |
| D.pse sites: | 6 | |
| Aligned sites: | 3 | |
| Aligned + preserved sites: | 6 | |
| D.mel site dens: | 22.8 | |
| D.pse site dens: | 3.7 | |
| Aligned site dens: | 4.3 | |
| Aligned + preserved site dens: | 8.5 | |
| pCRM position relative to 5' gene: | within_intron | |
| pCRM position 5' gene relative: | 957 | |
| 5' gene CG: | CG14502 | |
| 5' gene: | CG14502 | |
| 5' gene insitu: | CG14502 insitu | |
| 5' gene flybase: | CG14502 flybase | |
| 5' gene start: | 13,356,066 | |
| 5' gene end: | 13,358,447 | |
| 5' gene txl start: | 13,357,608 | |
| pCRM position 3' gene relative: | within_intron | |
| pCRM position relative to 3' gene: | 957 | |
| 3' gene CG: | CG14502 | |
| 3' gene: | CG14502 | |
| 3' gene insitu: | CG14502 insitu | |
| 3' gene flybase: | CG14502 flybase | |
| 3' gene start: | 13,356,066 | |
| 3' gene end: | 13,358,447 | |
| 3' gene txl start: | 13,357,608 | |