| CRM: |
| PCE8017 |
|---|
| Overlaps: |
| cluster_at_56B |
|---|
| Reference: |
| Berman, 2002 |
|---|
| Berman 2002 ID: |
| 20 |
|---|
| Crm Activity: |
| - |
|---|
| 5' Primer: |
| 5'-TTAGGCGCGCCAGTCCTAATCCTCGCCCATA-3' |
|---|
| 3' Primer: |
| 5'-ATTGCGGCCGCTCAGTCAAAGTTGTCGCACAT-3' |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 2R |
|---|
| pCRM start: |
| 14,266,629 |
|---|
| pCRM end: |
| 14,267,261 |
|---|
| pCRM len: |
| 633 |
|---|
|
| D.pse region homologous: |
| 1 |
|---|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| Dpse_3213226_3212141_1_38431 |
|---|
| dpse start: |
| 16,180 |
|---|
| dpse end: |
| 16,510 |
|---|
| dpse len: |
| 331 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 4.2 |
|---|
|
| Percent identity: |
| 33.5% |
|---|
|
| D.mel sites: |
| 15 |
|---|
| D.pse sites: |
| 9 |
|---|
| Aligned sites: |
| 4 |
|---|
| Aligned + preserved sites: |
| 8 |
|---|
|
| D.mel site dens: |
| 23.7 |
|---|
| D.pse site dens: |
| 27.2 |
|---|
| Aligned site dens: |
| 6.3 |
|---|
| Aligned + preserved site dens: |
| 12.6 |
|---|
|
| pCRM position relative to 5' gene: |
| within_intron |
|---|
| pCRM position 5' gene relative: |
| 24,156 |
|---|
| 5' gene CG: |
| CG7097 |
|---|
| 5' gene: |
| CG7097 |
|---|
| 5' gene insitu: |
| CG7097 insitu |
|---|
| 5' gene flybase: |
| CG7097 flybase |
|---|
| 5' gene start: |
| 14,242,473 |
|---|
| 5' gene end: |
| 14,290,920 |
|---|
| 5' gene txl start: |
| 14,243,452 |
|---|
|
| pCRM position 3' gene relative: |
| within_intron |
|---|
| pCRM position relative to 3' gene: |
| 24,156 |
|---|
| 3' gene CG: |
| CG7097 |
|---|
| 3' gene: |
| CG7097 |
|---|
| 3' gene insitu: |
| CG7097 insitu |
|---|
| 3' gene flybase: |
| CG7097 flybase |
|---|
| 3' gene start: |
| 14,242,473 |
|---|
| 3' gene end: |
| 14,290,920 |
|---|
| 3' gene txl start: |
| 14,243,452 |
|---|
