| Region plot | Region plot detail | Dotplot |
| | |
| [jpg] [pdf] | [jpg] [pdf] | [jpg] [pdf] |
| CRM: | PCE8018 | |
|---|---|---|
| Overlaps: | cluster_at_59B | |
| Reference: | Berman, 2002 | |
| Berman 2002 ID: | 21 | |
| Crm Activity: | - | |
| 5' Primer: | 5'-TTAGGCGCGCCGCAGCGAAGTGGTCTCAATCT-3' | |
| 3' Primer: | 5'-ATTGCGGCCGCCGGCTGCACTTACGTTTCAC-3' | |
| D.mel fasta: | dmel unflanked | |
| pCRM region: | genomic region | |
| Chrom arm: | 2R | |
| pCRM start: | 17,995,894 | |
| pCRM end: | 17,996,609 | |
| pCRM len: | 716 | |
| D.pse region homologous: | 1 | |
| D.pse fasta: | dpse unflanked | |
| dpse arm: | Dpse_3212648_1_45519 | |
| dpse start: | 21,221 | |
| dpse end: | 22,180 | |
| dpse len: | 960 | |
| Flanked D.mel fasta: | dmel flanked | |
| Flanked D.pse fasta: | dpse flanked | |
| LAGAN alignment (readable): | alignment | |
| LAGAN alignment (mfa): | alignment | |
| D.mel binding site xml: | xml | |
| overall site conservation z-score: | 1.9 | |
| Percent identity: | 59.2% | |
| D.mel sites: | 16 | |
| D.pse sites: | 4 | |
| Aligned sites: | 2 | |
| Aligned + preserved sites: | 4 | |
| D.mel site dens: | 22.4 | |
| D.pse site dens: | 4.2 | |
| Aligned site dens: | 2.8 | |
| Aligned + preserved site dens: | 5.6 | |
| pCRM position relative to 5' gene: | within_intron | |
| pCRM position 5' gene relative: | 759 | |
| 5' gene CG: | CG32835 | |
| 5' gene: | CG32835 | |
| 5' gene insitu: | CG32835 insitu | |
| 5' gene flybase: | CG32835 flybase | |
| 5' gene start: | 17,997,368 | |
| 5' gene end: | 17,995,298 | |
| 5' gene txl start: | 17,997,283 | |
| pCRM position 3' gene relative: | within_intron | |
| pCRM position relative to 3' gene: | 759 | |
| 3' gene CG: | CG32835 | |
| 3' gene: | CG32835 | |
| 3' gene insitu: | CG32835 insitu | |
| 3' gene flybase: | CG32835 flybase | |
| 3' gene start: | 17,997,368 | |
| 3' gene end: | 17,995,298 | |
| 3' gene txl start: | 17,997,283 | |