pCRM PCE8018

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8018
Overlaps:
cluster_at_59B
Reference:
Berman, 2002
Berman 2002 ID:
21
Crm Activity:
-
5' Primer:
5'-TTAGGCGCGCCGCAGCGAAGTGGTCTCAATCT-3'
3' Primer:
5'-ATTGCGGCCGCCGGCTGCACTTACGTTTCAC-3'

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2R
pCRM start:
17,995,894
pCRM end:
17,996,609
pCRM len:
716

D.pse region homologous:
1
D.pse fasta:
dpse unflanked
dpse arm:
Dpse_3212648_1_45519
dpse start:
21,221
dpse end:
22,180
dpse len:
960

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
1.9

Percent identity:
59.2%

D.mel sites:
16
D.pse sites:
4
Aligned sites:
2
Aligned + preserved sites:
4

D.mel site dens:
22.4
D.pse site dens:
4.2
Aligned site dens:
2.8
Aligned + preserved site dens:
5.6

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
759
5' gene CG:
CG32835
5' gene:
CG32835
5' gene insitu:
CG32835 insitu
5' gene flybase:
CG32835 flybase
5' gene start:
17,997,368
5' gene end:
17,995,298
5' gene txl start:
17,997,283

pCRM position 3' gene relative:
within_intron
pCRM position relative to 3' gene:
759
3' gene CG:
CG32835
3' gene:
CG32835
3' gene insitu:
CG32835 insitu
3' gene flybase:
CG32835 flybase
3' gene start:
17,997,368
3' gene end:
17,995,298
3' gene txl start:
17,997,283