| Region plot | Region plot detail | Dotplot |
| | |
| [jpg] [pdf] | [jpg] [pdf] | [jpg] [pdf] |
| CRM: | PCE8019 | |
|---|---|---|
| Overlaps: | cluster_at_67B | |
| Reference: | Berman, 2002 | |
| Berman 2002 ID: | 22 | |
| Crm Activity: | - | |
| 5' Primer: | 5'-TTAGGCGCGCCAAATCCGCAAATGTAAGGTAT-3' | |
| 3' Primer: | 5'-ATTGCGGCCGCGGGCGAAAGACAAGTTAAA-3' | |
| D.mel fasta: | dmel unflanked | |
| pCRM region: | genomic region | |
| Chrom arm: | 3L | |
| pCRM start: | 9,529,913 | |
| pCRM end: | 9,530,579 | |
| pCRM len: | 667 | |
| D.pse region homologous: | 1 | |
| D.pse fasta: | dpse unflanked | |
| dpse arm: | Dpse_3212377_1_44926 | |
| dpse start: | 24,327 | |
| dpse end: | 25,001 | |
| dpse len: | 675 | |
| Flanked D.mel fasta: | dmel flanked | |
| Flanked D.pse fasta: | dpse flanked | |
| LAGAN alignment (readable): | alignment | |
| LAGAN alignment (mfa): | alignment | |
| D.mel binding site xml: | xml | |
| overall site conservation z-score: | 3.9 | |
| Percent identity: | 61.9% | |
| D.mel sites: | 15 | |
| D.pse sites: | 7 | |
| Aligned sites: | 5 | |
| Aligned + preserved sites: | 6 | |
| D.mel site dens: | 22.5 | |
| D.pse site dens: | 10.4 | |
| Aligned site dens: | 7.5 | |
| Aligned + preserved site dens: | 9.0 | |
| pCRM position relative to 5' gene: | within_intron | |
| pCRM position 5' gene relative: | 10,499 | |
| 5' gene CG: | CG32048 | |
| 5' gene: | CG32048 | |
| 5' gene insitu: | CG32048 insitu | |
| 5' gene flybase: | CG32048 flybase | |
| 5' gene start: | 9,541,078 | |
| 5' gene end: | 9,552,043 | |
| 5' gene txl start: | 9,544,519 | |
| pCRM position 3' gene relative: | within_intron | |
| pCRM position relative to 3' gene: | 10,499 | |
| 3' gene CG: | CG32048 | |
| 3' gene: | CG32048 | |
| 3' gene insitu: | CG32048 insitu | |
| 3' gene flybase: | CG32048 flybase | |
| 3' gene start: | 9,541,078 | |
| 3' gene end: | 9,552,043 | |
| 3' gene txl start: | 9,544,519 | |