| Region plot | Region plot detail | Dotplot |
| | |
| [jpg] [pdf] | [jpg] [pdf] | [jpg] [pdf] |
| CRM: | PCE8021 | |
|---|---|---|
| Overlaps: | cluster_at_75C | |
| Reference: | Berman, 2002 | |
| Berman 2002 ID: | 23 | |
| Crm Activity: | - | |
| 5' Primer: | 5'-TTAGGCGCGCCGAGCGAAGGATACAGGATCTA-3' | |
| 3' Primer: | 5'-ATTGCGGCCGCCGCACAGTCCACTCGTAA-3' | |
| D.mel fasta: | dmel unflanked | |
| pCRM region: | genomic region | |
| Chrom arm: | 3L | |
| pCRM start: | 18,339,914 | |
| pCRM end: | 18,340,665 | |
| pCRM len: | 752 | |
| D.pse region homologous: | 1 | |
| D.pse fasta: | dpse unflanked | |
| dpse arm: | Dpse_3212212_1_56415 | |
| dpse start: | 31,359 | |
| dpse end: | 31,998 | |
| dpse len: | 640 | |
| Flanked D.mel fasta: | dmel flanked | |
| Flanked D.pse fasta: | dpse flanked | |
| LAGAN alignment (readable): | alignment | |
| LAGAN alignment (mfa): | alignment | |
| D.mel binding site xml: | xml | |
| overall site conservation z-score: | 8.1 | |
| Percent identity: | 58.9% | |
| D.mel sites: | 19 | |
| D.pse sites: | 13 | |
| Aligned sites: | 10 | |
| Aligned + preserved sites: | 12 | |
| D.mel site dens: | 25.3 | |
| D.pse site dens: | 20.3 | |
| Aligned site dens: | 13.3 | |
| Aligned + preserved site dens: | 16.0 | |
| pCRM position relative to 5' gene: | upstream | |
| pCRM position 5' gene relative: | -86,621 | |
| 5' gene CG: | CG4345 | |
| 5' gene: | grim | |
| 5' gene insitu: | grim insitu | |
| 5' gene flybase: | grim flybase | |
| 5' gene start: | 18,253,293 | |
| 5' gene end: | 18,251,597 | |
| 5' gene txl start: | 18,252,978 | |
| pCRM position 3' gene relative: | downstream | |
| pCRM position relative to 3' gene: | 6,617 | |
| 3' gene CG: | CG4319 | |
| 3' gene: | rpr | |
| 3' gene insitu: | rpr insitu | |
| 3' gene flybase: | rpr flybase | |
| 3' gene start: | 18,347,282 | |
| 3' gene end: | 18,346,431 | |
| 3' gene txl start: | 18,347,114 | |