| Region plot | Region plot detail | Dotplot |
| | |
| [jpg] [pdf] | [jpg] [pdf] | [jpg] [pdf] |
| CRM: | PCE8022 | |
|---|---|---|
| Overlaps: | cluster_at_76C | |
| Reference: | Berman, 2002 | |
| Berman 2002 ID: | 24 | |
| Crm Activity: | - | |
| 5' Primer: | 5'-TTAGGCGCGCCGCCGCAGGGAAGGTAAGTT-3' | |
| 3' Primer: | 5'-ATTGCGGCCGCACTTAATATGCACGGCGAGTG-3' | |
| D.mel fasta: | dmel unflanked | |
| pCRM region: | genomic region | |
| Chrom arm: | 3L | |
| pCRM start: | 19,594,180 | |
| pCRM end: | 19,594,883 | |
| pCRM len: | 704 | |
| D.pse region homologous: | 1 | |
| D.pse fasta: | dpse unflanked | |
| dpse arm: | Dpse_3213110_1_49535 | |
| dpse start: | 22,994 | |
| dpse end: | 23,718 | |
| dpse len: | 725 | |
| Flanked D.mel fasta: | dmel flanked | |
| Flanked D.pse fasta: | dpse flanked | |
| LAGAN alignment (readable): | alignment | |
| LAGAN alignment (mfa): | alignment | |
| D.mel binding site xml: | xml | |
| overall site conservation z-score: | 5.8 | |
| Percent identity: | 67.5% | |
| D.mel sites: | 15 | |
| D.pse sites: | 9 | |
| Aligned sites: | 7 | |
| Aligned + preserved sites: | 9 | |
| D.mel site dens: | 21.3 | |
| D.pse site dens: | 12.4 | |
| Aligned site dens: | 9.9 | |
| Aligned + preserved site dens: | 12.8 | |
| pCRM position relative to 5' gene: | upstream | |
| pCRM position 5' gene relative: | -1,409 | |
| 5' gene CG: | CG8786 | |
| 5' gene: | CG8786 | |
| 5' gene insitu: | CG8786 insitu | |
| 5' gene flybase: | CG8786 flybase | |
| 5' gene start: | 19,592,771 | |
| 5' gene end: | 19,587,721 | |
| 5' gene txl start: | 19,592,624 | |
| pCRM position 3' gene relative: | downstream | |
| pCRM position relative to 3' gene: | 4,923 | |
| 3' gene CG: | CG8782 | |
| 3' gene: | CG8782 | |
| 3' gene insitu: | CG8782 insitu | |
| 3' gene flybase: | CG8782 flybase | |
| 3' gene start: | 19,599,806 | |
| 3' gene end: | 19,597,232 | |
| 3' gene txl start: | 19,599,717 | |