| CRM: |
| PCE8023 |
|---|
| Overlaps: |
| cluster_at_84A |
|---|
| Reference: |
| Berman, 2002 |
|---|
| Berman 2002 ID: |
| 25 |
|---|
| Crm Activity: |
| - |
|---|
| 5' Primer: |
| 5'-TTAGGCGCGCCGGTTGCGGTTCGTGCTC-3' |
|---|
| 3' Primer: |
| 5'-ATTGCGGCCGCAGTATCACTGGTTGGCGATGG-3' |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3R |
|---|
| pCRM start: |
| 2,595,162 |
|---|
| pCRM end: |
| 2,595,926 |
|---|
| pCRM len: |
| 765 |
|---|
|
| D.pse region homologous: |
| 1 |
|---|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| Dpse_3212942_3212942_1_46935 |
|---|
| dpse start: |
| 23,130 |
|---|
| dpse end: |
| 24,130 |
|---|
| dpse len: |
| 1,001 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 3.8 |
|---|
|
| Percent identity: |
| 54.9% |
|---|
|
| D.mel sites: |
| 16 |
|---|
| D.pse sites: |
| 7 |
|---|
| Aligned sites: |
| 5 |
|---|
| Aligned + preserved sites: |
| 7 |
|---|
|
| D.mel site dens: |
| 20.9 |
|---|
| D.pse site dens: |
| 7.0 |
|---|
| Aligned site dens: |
| 6.5 |
|---|
| Aligned + preserved site dens: |
| 9.2 |
|---|
|
| pCRM position relative to 5' gene: |
| downstream |
|---|
| pCRM position 5' gene relative: |
| 6,847 |
|---|
| 5' gene CG: |
| CG2198 |
|---|
| 5' gene: |
| Ama |
|---|
| 5' gene insitu: |
| Ama insitu |
|---|
| 5' gene flybase: |
| Ama flybase |
|---|
| 5' gene start: |
| 2,588,315 |
|---|
| 5' gene end: |
| 2,590,984 |
|---|
| 5' gene txl start: |
| 2,589,562 |
|---|
|
| pCRM position 3' gene relative: |
| upstream |
|---|
| pCRM position relative to 3' gene: |
| -21,632 |
|---|
| 3' gene CG: |
| CG2189 |
|---|
| 3' gene: |
| Dfd |
|---|
| 3' gene insitu: |
| Dfd insitu |
|---|
| 3' gene flybase: |
| Dfd flybase |
|---|
| 3' gene start: |
| 2,617,558 |
|---|
| 3' gene end: |
| 2,628,154 |
|---|
| 3' gene txl start: |
| 2,618,047 |
|---|
