pCRM PCE8024

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8024
Overlaps:
ftz stripes 1/5
Reference:
Calhoun, 2003
Berman 2002 ID:
4
Crm Activity:
+
5' Primer:
5'-TTAGGCGCGCCCAAATACAGTATGCGTCAGAA-3'
3' Primer:
5'-ATTGCGGCCGCGGCCAAACGACAGACTAA-3'

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R
pCRM start:
2,693,713
pCRM end:
2,694,405
pCRM len:
693

D.pse region homologous:
1
D.pse fasta:
dpse unflanked
dpse arm:
Dpse_3212942_1_49671
dpse start:
24,755
dpse end:
25,498
dpse len:
744

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
7.8

Percent identity:
76.8%

D.mel sites:
14
D.pse sites:
10
Aligned sites:
10
Aligned + preserved sites:
10

D.mel site dens:
20.2
D.pse site dens:
13.4
Aligned site dens:
14.4
Aligned + preserved site dens:
14.4

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
3,667
5' gene CG:
CG2047
5' gene:
ftz
5' gene insitu:
ftz insitu
5' gene flybase:
ftz flybase
5' gene start:
2,690,046
5' gene end:
2,691,951
5' gene txl start:
2,690,116

pCRM position 3' gene relative:
downstream
pCRM position relative to 3' gene:
131,873
3' gene CG:
CG1028
3' gene:
Antp
3' gene insitu:
Antp insitu
3' gene flybase:
Antp flybase
3' gene start:
2,826,278
3' gene end:
2,721,975
3' gene txl start:
2,735,633