| Region plot | Region plot detail | Dotplot |
| | |
| [jpg] [pdf] | [jpg] [pdf] | [jpg] [pdf] |
| CRM: | PCE8024 | |
|---|---|---|
| Overlaps: | ftz stripes 1/5 | |
| Reference: | Calhoun, 2003 | |
| Berman 2002 ID: | 4 | |
| Crm Activity: | + | |
| 5' Primer: | 5'-TTAGGCGCGCCCAAATACAGTATGCGTCAGAA-3' | |
| 3' Primer: | 5'-ATTGCGGCCGCGGCCAAACGACAGACTAA-3' | |
| D.mel fasta: | dmel unflanked | |
| pCRM region: | genomic region | |
| Chrom arm: | 3R | |
| pCRM start: | 2,693,713 | |
| pCRM end: | 2,694,405 | |
| pCRM len: | 693 | |
| D.pse region homologous: | 1 | |
| D.pse fasta: | dpse unflanked | |
| dpse arm: | Dpse_3212942_1_49671 | |
| dpse start: | 24,755 | |
| dpse end: | 25,498 | |
| dpse len: | 744 | |
| Flanked D.mel fasta: | dmel flanked | |
| Flanked D.pse fasta: | dpse flanked | |
| LAGAN alignment (readable): | alignment | |
| LAGAN alignment (mfa): | alignment | |
| D.mel binding site xml: | xml | |
| overall site conservation z-score: | 7.8 | |
| Percent identity: | 76.8% | |
| D.mel sites: | 14 | |
| D.pse sites: | 10 | |
| Aligned sites: | 10 | |
| Aligned + preserved sites: | 10 | |
| D.mel site dens: | 20.2 | |
| D.pse site dens: | 13.4 | |
| Aligned site dens: | 14.4 | |
| Aligned + preserved site dens: | 14.4 | |
| pCRM position relative to 5' gene: | downstream | |
| pCRM position 5' gene relative: | 3,667 | |
| 5' gene CG: | CG2047 | |
| 5' gene: | ftz | |
| 5' gene insitu: | ftz insitu | |
| 5' gene flybase: | ftz flybase | |
| 5' gene start: | 2,690,046 | |
| 5' gene end: | 2,691,951 | |
| 5' gene txl start: | 2,690,116 | |
| pCRM position 3' gene relative: | downstream | |
| pCRM position relative to 3' gene: | 131,873 | |
| 3' gene CG: | CG1028 | |
| 3' gene: | Antp | |
| 3' gene insitu: | Antp insitu | |
| 3' gene flybase: | Antp flybase | |
| 3' gene start: | 2,826,278 | |
| 3' gene end: | 2,721,975 | |
| 3' gene txl start: | 2,735,633 | |