| Region plot | Region plot detail | Dotplot |
| | |
| [jpg] [pdf] | [jpg] [pdf] | [jpg] [pdf] |
| CRM: | PCE8025 | |
|---|---|---|
| Overlaps: | cluster_at_85C | |
| Reference: | Berman, 2002 | |
| Berman 2002 ID: | 26 | |
| Crm Activity: | - | |
| 5' Primer: | 5'-TTAGGCGCGCCAAAGCCACAGAACTCGCATAC-3' | |
| 3' Primer: | 5'-ATTGCGGCCGCGGCCTTGAGAAATGTTTACCA-3' | |
| D.mel fasta: | dmel unflanked | |
| pCRM region: | genomic region | |
| Chrom arm: | 3R | |
| pCRM start: | 4,944,607 | |
| pCRM end: | 4,945,444 | |
| pCRM len: | 838 | |
| D.pse region homologous: | 1 | |
| D.pse fasta: | dpse unflanked | |
| dpse arm: | Dpse_3213126_1_55976 | |
| dpse start: | 27,604 | |
| dpse end: | 28,430 | |
| dpse len: | 827 | |
| Flanked D.mel fasta: | dmel flanked | |
| Flanked D.pse fasta: | dpse flanked | |
| LAGAN alignment (readable): | alignment | |
| LAGAN alignment (mfa): | alignment | |
| D.mel binding site xml: | xml | |
| overall site conservation z-score: | 1.0 | |
| Percent identity: | 53.8% | |
| D.mel sites: | 16 | |
| D.pse sites: | 6 | |
| Aligned sites: | 1 | |
| Aligned + preserved sites: | 5 | |
| D.mel site dens: | 19.1 | |
| D.pse site dens: | 7.3 | |
| Aligned site dens: | 1.2 | |
| Aligned + preserved site dens: | 6.0 | |
| pCRM position relative to 5' gene: | within_intron | |
| pCRM position 5' gene relative: | 117,315 | |
| 5' gene CG: | CG9755 | |
| 5' gene: | pum | |
| 5' gene insitu: | pum insitu | |
| 5' gene flybase: | pum flybase | |
| 5' gene start: | 5,062,759 | |
| 5' gene end: | 4,895,489 | |
| 5' gene txl start: | 5,059,599 | |
| pCRM position 3' gene relative: | within_intron | |
| pCRM position relative to 3' gene: | 117,315 | |
| 3' gene CG: | CG9755 | |
| 3' gene: | pum | |
| 3' gene insitu: | pum insitu | |
| 3' gene flybase: | pum flybase | |
| 3' gene start: | 5,062,759 | |
| 3' gene end: | 4,895,489 | |
| 3' gene txl start: | 5,059,599 | |