| Region plot | Region plot detail | Dotplot |
| | |
| [jpg] [pdf] | [jpg] [pdf] | [jpg] [pdf] |
| CRM: | PCE8026 | |
|---|---|---|
| Overlaps: | cluster_at_88F | |
| Reference: | Berman, 2002 | |
| Berman 2002 ID: | 27 | |
| Crm Activity: | - | |
| 5' Primer: | 5'-TTAGGCGCGCCTGTCCTGCGACGAGTGTG-3' | |
| 3' Primer: | 5'-ATTGCGGCCGCAAATAAGTGGCATCCCGTTGT-3' | |
| D.mel fasta: | dmel unflanked | |
| pCRM region: | genomic region | |
| Chrom arm: | 3R | |
| pCRM start: | 11,424,315 | |
| pCRM end: | 11,424,996 | |
| pCRM len: | 682 | |
| D.pse region homologous: | 1 | |
| D.pse fasta: | dpse unflanked | |
| dpse arm: | Dpse_3212649_1_45115 | |
| dpse start: | 28,504 | |
| dpse end: | 29,599 | |
| dpse len: | 1,096 | |
| Flanked D.mel fasta: | dmel flanked | |
| Flanked D.pse fasta: | dpse flanked | |
| LAGAN alignment (readable): | alignment | |
| LAGAN alignment (mfa): | alignment | |
| D.mel binding site xml: | xml | |
| overall site conservation z-score: | 3.5 | |
| Percent identity: | 61.9% | |
| D.mel sites: | 16 | |
| D.pse sites: | 6 | |
| Aligned sites: | 5 | |
| Aligned + preserved sites: | 5 | |
| D.mel site dens: | 23.5 | |
| D.pse site dens: | 5.5 | |
| Aligned site dens: | 7.3 | |
| Aligned + preserved site dens: | 7.3 | |
| pCRM position relative to 5' gene: | upstream | |
| pCRM position 5' gene relative: | -45,803 | |
| 5' gene CG: | CG18516 | |
| 5' gene: | CG18516 | |
| 5' gene insitu: | CG18516 insitu | |
| 5' gene flybase: | CG18516 flybase | |
| 5' gene start: | 11,378,512 | |
| 5' gene end: | 11,374,367 | |
| 5' gene txl start: | 11,378,512 | |
| pCRM position 3' gene relative: | upstream | |
| pCRM position relative to 3' gene: | -33,626 | |
| 3' gene CG: | CG5302 | |
| 3' gene: | CG5302 | |
| 3' gene insitu: | CG5302 insitu | |
| 3' gene flybase: | CG5302 flybase | |
| 3' gene start: | 11,458,622 | |
| 3' gene end: | 11,464,995 | |
| 3' gene txl start: | 11,458,622 | |