| CRM: |
| PCE8027 |
|---|
| Overlaps: |
| sqz neurogenic |
|---|
| Reference: |
| Berman, 2004 |
|---|
| Berman 2002 ID: |
| 6 |
|---|
| Crm Activity: |
| + |
|---|
| 5' Primer: |
| 5'-TTAGGCGCGCCGGCGAATCAAACACTTAAC-3' |
|---|
| 3' Primer: |
| 5'-ATTGCGGCCGCAGATAAACAAATAACCGAAGG-3' |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3R |
|---|
| pCRM start: |
| 15,000,096 |
|---|
| pCRM end: |
| 15,000,905 |
|---|
| pCRM len: |
| 810 |
|---|
|
| D.pse region homologous: |
| 1 |
|---|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| Dpse_3212786_3212587_1_36348 |
|---|
| dpse start: |
| 11,368 |
|---|
| dpse end: |
| 12,185 |
|---|
| dpse len: |
| 818 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 8.9 |
|---|
|
| Percent identity: |
| 69.4% |
|---|
|
| D.mel sites: |
| 16 |
|---|
| D.pse sites: |
| 17 |
|---|
| Aligned sites: |
| 11 |
|---|
| Aligned + preserved sites: |
| 14 |
|---|
|
| D.mel site dens: |
| 19.8 |
|---|
| D.pse site dens: |
| 20.8 |
|---|
| Aligned site dens: |
| 13.6 |
|---|
| Aligned + preserved site dens: |
| 17.3 |
|---|
|
| pCRM position relative to 5' gene: |
| downstream |
|---|
| pCRM position 5' gene relative: |
| 10,137 |
|---|
| 5' gene CG: |
| CG5557 |
|---|
| 5' gene: |
| sqz |
|---|
| 5' gene insitu: |
| sqz insitu |
|---|
| 5' gene flybase: |
| sqz flybase |
|---|
| 5' gene start: |
| 14,989,959 |
|---|
| 5' gene end: |
| 14,996,313 |
|---|
| 5' gene txl start: |
| 14,993,773 |
|---|
|
| pCRM position 3' gene relative: |
| upstream |
|---|
| pCRM position relative to 3' gene: |
| -1,833 |
|---|
| 3' gene CG: |
| CG14282 |
|---|
| 3' gene: |
| CG14282 |
|---|
| 3' gene insitu: |
| CG14282 insitu |
|---|
| 3' gene flybase: |
| CG14282 flybase |
|---|
| 3' gene start: |
| 15,002,738 |
|---|
| 3' gene end: |
| 15,003,672 |
|---|
| 3' gene txl start: |
| 15,002,790 |
|---|
