pCRM PCE8027

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8027
Overlaps:
sqz neurogenic
Reference:
Berman, 2004
Berman 2002 ID:
6
Crm Activity:
+
5' Primer:
5'-TTAGGCGCGCCGGCGAATCAAACACTTAAC-3'
3' Primer:
5'-ATTGCGGCCGCAGATAAACAAATAACCGAAGG-3'

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R
pCRM start:
15,000,096
pCRM end:
15,000,905
pCRM len:
810

D.pse region homologous:
1
D.pse fasta:
dpse unflanked
dpse arm:
Dpse_3212786_3212587_1_36348
dpse start:
11,368
dpse end:
12,185
dpse len:
818

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
8.9

Percent identity:
69.4%

D.mel sites:
16
D.pse sites:
17
Aligned sites:
11
Aligned + preserved sites:
14

D.mel site dens:
19.8
D.pse site dens:
20.8
Aligned site dens:
13.6
Aligned + preserved site dens:
17.3

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
10,137
5' gene CG:
CG5557
5' gene:
sqz
5' gene insitu:
sqz insitu
5' gene flybase:
sqz flybase
5' gene start:
14,989,959
5' gene end:
14,996,313
5' gene txl start:
14,993,773

pCRM position 3' gene relative:
upstream
pCRM position relative to 3' gene:
-1,833
3' gene CG:
CG14282
3' gene:
CG14282
3' gene insitu:
CG14282 insitu
3' gene flybase:
CG14282 flybase
3' gene start:
15,002,738
3' gene end:
15,003,672
3' gene txl start:
15,002,790