| CRM: |
| PCE8028 |
|---|
| Overlaps: |
| cluster_at_95C |
|---|
| Reference: |
| Berman, 2002 |
|---|
| Berman 2002 ID: |
| 28 |
|---|
| Crm Activity: |
| - |
|---|
| 5' Primer: |
| 5'-TTAGGCGCGCCGGCATTTCTGGCATTTCGTCT-3' |
|---|
| 3' Primer: |
| 5'-ATTGCGGCCGCGAACAAAGCCGAACGGACA-3' |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3R |
|---|
| pCRM start: |
| 19,757,908 |
|---|
| pCRM end: |
| 19,758,531 |
|---|
| pCRM len: |
| 624 |
|---|
|
| D.pse region homologous: |
| 1 |
|---|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| Dpse_3213015_3213015_3213215_1_54769 |
|---|
| dpse start: |
| 22,188 |
|---|
| dpse end: |
| 22,910 |
|---|
| dpse len: |
| 723 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 3.5 |
|---|
|
| Percent identity: |
| 60.3% |
|---|
|
| D.mel sites: |
| 15 |
|---|
| D.pse sites: |
| 6 |
|---|
| Aligned sites: |
| 4 |
|---|
| Aligned + preserved sites: |
| 6 |
|---|
|
| D.mel site dens: |
| 24.0 |
|---|
| D.pse site dens: |
| 8.3 |
|---|
| Aligned site dens: |
| 6.4 |
|---|
| Aligned + preserved site dens: |
| 9.6 |
|---|
|
| pCRM position relative to 5' gene: |
| within_intron |
|---|
| pCRM position 5' gene relative: |
| 950 |
|---|
| 5' gene CG: |
| CG5320 |
|---|
| 5' gene: |
| Gdh |
|---|
| 5' gene insitu: |
| Gdh insitu |
|---|
| 5' gene flybase: |
| Gdh flybase |
|---|
| 5' gene start: |
| 19,759,481 |
|---|
| 5' gene end: |
| 19,752,330 |
|---|
| 5' gene txl start: |
| 19,759,390 |
|---|
|
| pCRM position 3' gene relative: |
| within_intron |
|---|
| pCRM position relative to 3' gene: |
| 950 |
|---|
| 3' gene CG: |
| CG5320 |
|---|
| 3' gene: |
| Gdh |
|---|
| 3' gene insitu: |
| Gdh insitu |
|---|
| 3' gene flybase: |
| Gdh flybase |
|---|
| 3' gene start: |
| 19,759,481 |
|---|
| 3' gene end: |
| 19,752,330 |
|---|
| 3' gene txl start: |
| 19,759,390 |
|---|
