pCRM PCE8050
| CRM: |
| PCE8050 |
|---|
| Overlaps: |
| hairy stripes 3/4,6,7 |
|---|
| Reference: |
| Pankratz, 1990 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3L.3 |
|---|
| pCRM start: |
| 8,622,879 |
|---|
| pCRM end: |
| 8,626,839 |
|---|
| pCRM len: |
| 3,961 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,377 |
|---|
| dpse start: |
| 152,001 |
|---|
| dpse end: |
| 147,207 |
|---|
| dpse len: |
| 4,795 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 20.1 |
|---|
|
| percent iden: |
| 63.1% |
|---|
|
| D.mel sites: |
| 71 |
|---|
| D.pse sites: |
| 62 |
|---|
| Aligned sites: |
| 33 |
|---|
| Aligned + preserved sites: |
| 62 |
|---|
|
| D.mel site dens: |
| 17.9 |
|---|
| D.pse site dens: |
| 12.9 |
|---|
| Aligned site dens: |
| 8.3 |
|---|
| Aligned + preserved site dens: |
| 15.7 |
|---|
|
| pCRM position relative to 5' gene: |
| downstream |
|---|
| pCRM position 5' gene relative: |
| +14646 |
|---|
| 5' gene CG: |
| CG6486 |
|---|
| 5' gene: |
| CG6486 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| CG6486 flybase |
|---|
| 5' gene start: |
| 8,608,233 |
|---|
| 5' gene end: |
| 8,609,426 |
|---|
| 5' gene txl start: |
| 8,608,256 |
|---|
|
| pCRM position 3' gene relative: |
| -7,829 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG6494 |
|---|
| 3' gene: |
| h |
|---|
| 3' Gap/pair-rule annotation: |
| FlyBase |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| h flybase |
|---|
| 3' gene start: |
| 8,634,668 |
|---|
| 3' gene end: |
| 8,637,949 |
|---|
| 3' gene txl start: |
| 8,634,959 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
