pCRM PCE8051
| CRM: |
| PCE8051 |
|---|
| Overlaps: |
| kni upstream |
|---|
| Reference: |
| Pankratz, 1989 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3L.3 |
|---|
| pCRM start: |
| 20,614,714 |
|---|
| pCRM end: |
| 20,617,020 |
|---|
| pCRM len: |
| 2,307 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,213,110 |
|---|
| dpse start: |
| 1,598,854 |
|---|
| dpse end: |
| 1,601,449 |
|---|
| dpse len: |
| 2,596 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 13.2 |
|---|
|
| percent iden: |
| 63.4% |
|---|
|
| D.mel sites: |
| 36 |
|---|
| D.pse sites: |
| 33 |
|---|
| Aligned sites: |
| 24 |
|---|
| Aligned + preserved sites: |
| 31 |
|---|
|
| D.mel site dens: |
| 15.6 |
|---|
| D.pse site dens: |
| 12.7 |
|---|
| Aligned site dens: |
| 10.4 |
|---|
| Aligned + preserved site dens: |
| 13.4 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -813 |
|---|
| 5' gene CG: |
| CG4717 |
|---|
| 5' gene: |
| kni |
|---|
| 5' Gap/pair-rule annotation: |
| FlyBase |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| kni flybase |
|---|
| 5' gene start: |
| 20,613,901 |
|---|
| 5' gene end: |
| 20,610,867 |
|---|
| 5' gene txl start: |
| 20,612,878 |
|---|
|
| pCRM position 3' gene relative: |
| +20716 |
|---|
| pCRM position relative to 3' gene: |
| downstream |
|---|
| 3' gene CG: |
| CG13253 |
|---|
| 3' gene: |
| CG13253 |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| CG13253 flybase |
|---|
| 3' gene start: |
| 20,637,736 |
|---|
| 3' gene end: |
| 20,635,332 |
|---|
| 3' gene txl start: |
| 20,635,683 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
