pCRM PCE8051

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CRM:
PCE8051
Overlaps:
kni upstream
Reference:
Pankratz, 1989

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
20,614,714
pCRM end:
20,617,020
pCRM len:
2,307

D.pse fasta:
dpse unflanked
dpse arm:
3,213,110
dpse start:
1,598,854
dpse end:
1,601,449
dpse len:
2,596

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
13.2

percent iden:
63.4%

D.mel sites:
36
D.pse sites:
33
Aligned sites:
24
Aligned + preserved sites:
31

D.mel site dens:
15.6
D.pse site dens:
12.7
Aligned site dens:
10.4
Aligned + preserved site dens:
13.4

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-813
5' gene CG:
CG4717
5' gene:
kni
5' Gap/pair-rule annotation:
FlyBase
5' gene insitu:
5' gene flybase:
kni flybase
5' gene start:
20,613,901
5' gene end:
20,610,867
5' gene txl start:
20,612,878

pCRM position 3' gene relative:
+20716
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG13253
3' gene:
CG13253
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG13253 flybase
3' gene start:
20,637,736
3' gene end:
20,635,332
3' gene txl start:
20,635,683

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: