pCRM PCE8052
| CRM: |
| PCE8052 |
|---|
| Overlaps: |
| pdm1 blastoderm |
|---|
| Reference: |
| Berman, 2004 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 2L.3C |
|---|
| pCRM start: |
| 12,604,311 |
|---|
| pCRM end: |
| 12,606,913 |
|---|
| pCRM len: |
| 2,603 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,646 |
|---|
| dpse start: |
| 222,486 |
|---|
| dpse end: |
| 225,841 |
|---|
| dpse len: |
| 3,356 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 11.6 |
|---|
|
| percent iden: |
| 63.0% |
|---|
|
| D.mel sites: |
| 34 |
|---|
| D.pse sites: |
| 41 |
|---|
| Aligned sites: |
| 19 |
|---|
| Aligned + preserved sites: |
| 33 |
|---|
|
| D.mel site dens: |
| 13.1 |
|---|
| D.pse site dens: |
| 12.2 |
|---|
| Aligned site dens: |
| 7.3 |
|---|
| Aligned + preserved site dens: |
| 12.7 |
|---|
|
| pCRM position relative to 5' gene: |
| downstream |
|---|
| pCRM position 5' gene relative: |
| +1653 |
|---|
| 5' gene CG: |
| CG15488 |
|---|
| 5' gene: |
| CG15488 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| CG15488 flybase |
|---|
| 5' gene start: |
| 12,602,658 |
|---|
| 5' gene end: |
| 12,603,090 |
|---|
| 5' gene txl start: |
| 12,602,658 |
|---|
|
| pCRM position 3' gene relative: |
| -304 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG6246 |
|---|
| 3' gene: |
| nub |
|---|
| 3' Gap/pair-rule annotation: |
| BDGP |
|---|
| 3' gene insitu: |
| nub insitu |
|---|
| 3' gene flybase: |
| nub flybase |
|---|
| 3' gene start: |
| 12,607,217 |
|---|
| 3' gene end: |
| 12,617,004 |
|---|
| 3' gene txl start: |
| 12,607,865 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
