pCRM PCE8054
| CRM: |
| PCE8054 |
|---|
| Overlaps: |
| hairy stripes 1,5 |
|---|
| Reference: |
| Pankratz, 1990 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3L.3 |
|---|
| pCRM start: |
| 8,628,846 |
|---|
| pCRM end: |
| 8,631,011 |
|---|
| pCRM len: |
| 2,166 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,377 |
|---|
| dpse start: |
| 145,327 |
|---|
| dpse end: |
| 143,107 |
|---|
| dpse len: |
| 2,221 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 10.5 |
|---|
|
| percent iden: |
| 57.8% |
|---|
|
| D.mel sites: |
| 35 |
|---|
| D.pse sites: |
| 31 |
|---|
| Aligned sites: |
| 16 |
|---|
| Aligned + preserved sites: |
| 29 |
|---|
|
| D.mel site dens: |
| 16.2 |
|---|
| D.pse site dens: |
| 14.0 |
|---|
| Aligned site dens: |
| 7.4 |
|---|
| Aligned + preserved site dens: |
| 13.4 |
|---|
|
| pCRM position relative to 5' gene: |
| downstream |
|---|
| pCRM position 5' gene relative: |
| +20613 |
|---|
| 5' gene CG: |
| CG6486 |
|---|
| 5' gene: |
| CG6486 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| CG6486 flybase |
|---|
| 5' gene start: |
| 8,608,233 |
|---|
| 5' gene end: |
| 8,609,426 |
|---|
| 5' gene txl start: |
| 8,608,256 |
|---|
|
| pCRM position 3' gene relative: |
| -3,657 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG6494 |
|---|
| 3' gene: |
| h |
|---|
| 3' Gap/pair-rule annotation: |
| FlyBase |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| h flybase |
|---|
| 3' gene start: |
| 8,634,668 |
|---|
| 3' gene end: |
| 8,637,949 |
|---|
| 3' gene txl start: |
| 8,634,959 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
