pCRM PCE8055
| CRM: |
| PCE8055 |
|---|
| Overlaps: |
| runt stripe 3 |
|---|
| Reference: |
| Butler, 1992 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| X.3 |
|---|
| pCRM start: |
| 20,356,848 |
|---|
| pCRM end: |
| 20,360,054 |
|---|
| pCRM len: |
| 3,207 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,383 |
|---|
| dpse start: |
| 122,418 |
|---|
| dpse end: |
| 125,690 |
|---|
| dpse len: |
| 3,273 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 10.3 |
|---|
|
| percent iden: |
| 55.9% |
|---|
|
| D.mel sites: |
| 45 |
|---|
| D.pse sites: |
| 34 |
|---|
| Aligned sites: |
| 17 |
|---|
| Aligned + preserved sites: |
| 34 |
|---|
|
| D.mel site dens: |
| 14.0 |
|---|
| D.pse site dens: |
| 10.4 |
|---|
| Aligned site dens: |
| 5.3 |
|---|
| Aligned + preserved site dens: |
| 10.6 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -9,192 |
|---|
| 5' gene CG: |
| CG1338 |
|---|
| 5' gene: |
| CG1338 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| CG1338 flybase |
|---|
| 5' gene start: |
| 20,347,656 |
|---|
| 5' gene end: |
| 20,343,243 |
|---|
| 5' gene txl start: |
| 20,347,578 |
|---|
|
| pCRM position 3' gene relative: |
| -6,801 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG1849 |
|---|
| 3' gene: |
| run |
|---|
| 3' Gap/pair-rule annotation: |
| BDGP |
|---|
| 3' gene insitu: |
| run insitu |
|---|
| 3' gene flybase: |
| run flybase |
|---|
| 3' gene start: |
| 20,366,855 |
|---|
| 3' gene end: |
| 20,369,741 |
|---|
| 3' gene txl start: |
| 20,367,107 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
