pCRM PCE8057
| CRM: |
| PCE8057 |
|---|
| Overlaps: |
| hb HZ1.4 |
|---|
| Reference: |
| Tautz, 1988 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3R.3 |
|---|
| pCRM start: |
| 4,526,225 |
|---|
| pCRM end: |
| 4,527,991 |
|---|
| pCRM len: |
| 1,767 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,440 |
|---|
| dpse start: |
| 111,283 |
|---|
| dpse end: |
| 109,443 |
|---|
| dpse len: |
| 1,841 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 9.6 |
|---|
|
| percent iden: |
| 63.2% |
|---|
|
| D.mel sites: |
| 28 |
|---|
| D.pse sites: |
| 24 |
|---|
| Aligned sites: |
| 16 |
|---|
| Aligned + preserved sites: |
| 21 |
|---|
|
| D.mel site dens: |
| 15.8 |
|---|
| D.pse site dens: |
| 13.0 |
|---|
| Aligned site dens: |
| 9.1 |
|---|
| Aligned + preserved site dens: |
| 11.9 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -2,670 |
|---|
| 5' gene CG: |
| CG9786 |
|---|
| 5' gene: |
| hb |
|---|
| 5' Gap/pair-rule annotation: |
| BDGP |
|---|
| 5' gene insitu: |
| hb insitu |
|---|
| 5' gene flybase: |
| hb flybase |
|---|
| 5' gene start: |
| 4,523,555 |
|---|
| 5' gene end: |
| 4,517,052 |
|---|
| 5' gene txl start: |
| 4,519,891 |
|---|
|
| pCRM position 3' gene relative: |
| +1273 |
|---|
| pCRM position relative to 3' gene: |
| within_intron |
|---|
| 3' gene CG: |
| CG8112 |
|---|
| 3' gene: |
| CG8112 |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| CG8112 flybase |
|---|
| 3' gene start: |
| 4,526,718 |
|---|
| 3' gene end: |
| 4,541,005 |
|---|
| 3' gene txl start: |
| 4,538,858 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
