pCRM PCE8060
| CRM: |
| PCE8060 |
|---|
| Overlaps: |
| gt posterior domain |
|---|
| Reference: |
| Berman, 2002 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| X.3 |
|---|
| pCRM start: |
| 2,186,709 |
|---|
| pCRM end: |
| 2,189,069 |
|---|
| pCRM len: |
| 2,361 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,206 |
|---|
| dpse start: |
| 7,199 |
|---|
| dpse end: |
| 9,253 |
|---|
| dpse len: |
| 2,055 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 8.9 |
|---|
|
| percent iden: |
| 45.3% |
|---|
|
| D.mel sites: |
| 29 |
|---|
| D.pse sites: |
| 22 |
|---|
| Aligned sites: |
| 17 |
|---|
| Aligned + preserved sites: |
| 21 |
|---|
|
| D.mel site dens: |
| 12.3 |
|---|
| D.pse site dens: |
| 10.7 |
|---|
| Aligned site dens: |
| 7.2 |
|---|
| Aligned + preserved site dens: |
| 8.9 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -974 |
|---|
| 5' gene CG: |
| CG7952 |
|---|
| 5' gene: |
| gt |
|---|
| 5' Gap/pair-rule annotation: |
| BDGP |
|---|
| 5' gene insitu: |
| gt insitu |
|---|
| 5' gene flybase: |
| gt flybase |
|---|
| 5' gene start: |
| 2,185,735 |
|---|
| 5' gene end: |
| 2,183,878 |
|---|
| 5' gene txl start: |
| 2,185,624 |
|---|
|
| pCRM position 3' gene relative: |
| +11679 |
|---|
| pCRM position relative to 3' gene: |
| downstream |
|---|
| 3' gene CG: |
| CG7925 |
|---|
| 3' gene: |
| tko |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| tko flybase |
|---|
| 3' gene start: |
| 2,200,748 |
|---|
| 3' gene end: |
| 2,199,078 |
|---|
| 3' gene txl start: |
| 2,200,557 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
