pCRM PCE8063
| CRM: |
| PCE8063 |
|---|
| Overlaps: |
| CE8021 |
|---|
| Reference: |
| Berman, 2004 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3L.3 |
|---|
| pCRM start: |
| 18,339,914 |
|---|
| pCRM end: |
| 18,341,941 |
|---|
| pCRM len: |
| 2,028 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,212 |
|---|
| dpse start: |
| 322,673 |
|---|
| dpse end: |
| 319,888 |
|---|
| dpse len: |
| 2,786 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 8.5 |
|---|
|
| percent iden: |
| 67.3% |
|---|
|
| D.mel sites: |
| 30 |
|---|
| D.pse sites: |
| 20 |
|---|
| Aligned sites: |
| 16 |
|---|
| Aligned + preserved sites: |
| 20 |
|---|
|
| D.mel site dens: |
| 14.8 |
|---|
| D.pse site dens: |
| 7.2 |
|---|
| Aligned site dens: |
| 7.9 |
|---|
| Aligned + preserved site dens: |
| 9.9 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -86,621 |
|---|
| 5' gene CG: |
| CG4345 |
|---|
| 5' gene: |
| grim |
|---|
| 5' Gap/pair-rule annotation: |
| BDGP |
|---|
| 5' gene insitu: |
| grim insitu |
|---|
| 5' gene flybase: |
| grim flybase |
|---|
| 5' gene start: |
| 18,253,293 |
|---|
| 5' gene end: |
| 18,251,597 |
|---|
| 5' gene txl start: |
| 18,252,978 |
|---|
|
| pCRM position 3' gene relative: |
| +5341 |
|---|
| pCRM position relative to 3' gene: |
| downstream |
|---|
| 3' gene CG: |
| CG4319 |
|---|
| 3' gene: |
| rpr |
|---|
| 3' Gap/pair-rule annotation: |
| FlyBase |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| rpr flybase |
|---|
| 3' gene start: |
| 18,347,282 |
|---|
| 3' gene end: |
| 18,346,431 |
|---|
| 3' gene txl start: |
| 18,347,114 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
