pCRM PCE8064

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8064
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
6,255,663
pCRM end:
6,256,945
pCRM len:
1,283

D.pse fasta:
dpse unflanked
dpse arm:
3,212,786
dpse start:
8,570
dpse end:
9,976
dpse len:
1,407

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
8.4

percent iden:
76.5%

D.mel sites:
18
D.pse sites:
18
Aligned sites:
13
Aligned + preserved sites:
17

D.mel site dens:
14.0
D.pse site dens:
12.8
Aligned site dens:
10.1
Aligned + preserved site dens:
13.3

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-13,879
5' gene CG:
CG6345
5' gene:
CG6345
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG6345 flybase
5' gene start:
6,241,784
5' gene end:
6,239,386
5' gene txl start:
6,241,724

pCRM position 3' gene relative:
-3,594
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG14680
3' gene:
Cyp12e1
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
Cyp12e1 flybase
3' gene start:
6,260,539
3' gene end:
6,262,403
3' gene txl start:
6,260,539

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: